Locus 10102

Sequence ID 3R_DroMel_CAF1
Location 27,073,389 – 27,073,504
Length 115
Max. P 0.790026
window16084

overview

Window 4

Location 27,073,389 – 27,073,504
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.34
Mean single sequence MFE -31.88
Consensus MFE -20.96
Energy contribution -22.96
Covariance contribution 2.00
Combinations/Pair 1.14
Mean z-score -2.31
Structure conservation index 0.66
SVM decision value 0.58
SVM RNA-class probability 0.790026
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27073389 115 + 27905053
UCUGAAGCAAACUUGCUCCACCGCCAAACACCGCUCCCUUUGCACACAGAGAAAAGGAGGACCAAUAUCUAUAUCUACAGAUAUUGGUAGCUGGGUAAAUAGUACUAUAAC----UUCC-
((((.((((....))))...............((.......))...)))).....(((((((((((((((........)))))))))).((((......)))).......)----))))- ( -26.60)
>DroSec_CAF1 10092 116 + 1
UCCGAGGCAAACUUGCUCCACCGCCCAACACCGCUCCCUUUGCACACAGAGAAAAGGGGGAGCAAUAUCUAAGUCUACAGAUAUUGGUAGUUGGGUAAAUAUUACUAUAUC----UUCAG
...(..(((....)))..)...(((((((((((((((((((.............)))))))))(((((((........)))))))))).)))))))...............----..... ( -37.92)
>DroSim_CAF1 10367 116 + 1
UCCGAGGCAAACUUGCUCGACCGCCCAACACCGCUCCCUUUGCACACAGAGAAAAGGGGCACCGAUAUCUAAAUCUACAUAUAUUGGUAGUUGGGUAAAUAUUACUAUAUC----UUUAG
..((((.((....))))))...(((((((...((((((((((....)))))....)))))((((((((............)))))))).)))))))...............----..... ( -32.60)
>DroEre_CAF1 10191 117 + 1
UCCGAAGCAAACUUGCUCCACCGCCCAACACCGCUCCCUUUGCACACAGAGAAAAGGG-GGGCAAUAUCUGUAUCUACUGAUAUUGGUAGUUGGGUAAAUAUAUCUAU--CUUUGUUGAG
...(.((((....)))).)...(((((((((((((((((((............)))))-))))((((((.((....)).))))))))).)))))))............--.......... ( -36.80)
>DroYak_CAF1 10144 118 + 1
UCCGAAGCCAACUUGCUCCACCGCCCAGCACCGCUCCCUUUGCACACAGCGAAAAUG--GAACUAUAUUUGUGUCUACUGAUAUUGGUAGUUGGGUAAAUAUUUCUAUAUCACUCUUGAG
...(.(((......))).)...((((((((((..(((.(((((.....)))))...)--)).........(((((....))))).))).)))))))........................ ( -25.50)
>consensus
UCCGAAGCAAACUUGCUCCACCGCCCAACACCGCUCCCUUUGCACACAGAGAAAAGGGGGACCAAUAUCUAUAUCUACAGAUAUUGGUAGUUGGGUAAAUAUUACUAUAUC____UUCAG
...(.(((......))).)...((((((((((.((((((((...........))))))))...(((((((........)))))))))).)))))))........................ (-20.96 = -22.96 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:56 2006