Locus 10101

Sequence ID 3R_DroMel_CAF1
Location 27,058,400 – 27,058,513
Length 113
Max. P 0.691828
window16083

overview

Window 3

Location 27,058,400 – 27,058,513
Length 113
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 77.85
Mean single sequence MFE -33.77
Consensus MFE -23.35
Energy contribution -22.93
Covariance contribution -0.41
Combinations/Pair 1.29
Mean z-score -1.24
Structure conservation index 0.69
SVM decision value 0.33
SVM RNA-class probability 0.691828
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27058400 113 + 27905053
----UGGGGCAAUCGCAACUGCAACACUGCAGCUUGCAGUUCAGAUUCUUGGGCAGCCGCUUCAUGUGGCUAAUGUUCUUGAUGAUGCUGUUGAUGCACUUGAUCUUGGUGGUGGUC
----.((((((.(((((((((((....))))).))))....(((..((..((((((((((.....)))))...)))))..)).....)))..))))).)))((((........)))) ( -32.90)
>DroPse_CAF1 19792 107 + 1
----UGGGGCAAUCGCAGCUGCAACAUUGCAGCUUGCAGCUCAGAUUCUUGGGCAGCCGCUUCAUGUGGCCGAUGUUCUUGAUGAUGCUGUUGAUGCACUUGAUCUGG------GUC
----..........(((((((((....)))))).))).((((((((((..((((((((((.....)))))...)))))..))...(((.......)))....))))))------)). ( -37.60)
>DroGri_CAF1 71 100 + 1
ACACAGCCGCAGCUGCAACUGCAGCAUUGCAAUUUGCAGUUCAAGUUCUUGGAAUGGCGCUUCAUGUGACUAAUGUUCUUGAUGAUGUUGUUGAUGUUCU-----------------
(((((((.((((((((....)))))(((((.....)))))(((((..(((((.....(((.....))).)))).)..)))))...))).)))).)))...----------------- ( -27.30)
>DroMoj_CAF1 954 97 + 1
---CAGUUACAGCUGCAGCUGCAGCACUGCAGCUUGCAGUUGAGGUUCUUGGAAUGACGCUUCAUGUGACUAAUGUUUUUGAUGAUGUUACUGAUGUUCU-----------------
---.(((((((((((((((((((....)))))).))))))((((((((.......)).)))))))))))))((((((......))))))...........----------------- ( -32.30)
>DroAna_CAF1 850 107 + 1
----UGGGGCAAUCGCAACUGCAACACUGCAGCUUGCAGUUCAGAUUCUUGGGCAGCCGCUUCAUGUGGCUGAUGUUCUUGAUGAUGCUGUUGAUGCACUUGAUUUUG------GCC
----..((.(((...(((.((((.((..(((((...((((((((....))))))((((((.....))))))...........))..))))))).)))).)))...)))------.)) ( -34.90)
>DroPer_CAF1 21618 107 + 1
----UGGGGCAAUCGCAGCUGCAACAUUGCAGCUUGCAGCUCAGAUUCUUGGGCAGCCGCUUCAUGUGGCCGAUGUUCUUGAUGAUGCUGUUGAUGCACUUGAUCUGG------GUC
----..........(((((((((....)))))).))).((((((((((..((((((((((.....)))))...)))))..))...(((.......)))....))))))------)). ( -37.60)
>consensus
____UGGGGCAAUCGCAACUGCAACACUGCAGCUUGCAGUUCAGAUUCUUGGGCAGCCGCUUCAUGUGGCUAAUGUUCUUGAUGAUGCUGUUGAUGCACUUGAUCU_G______GUC
........(((....((((.(((.((((((.....)))).......((..((((((((((.....)))))...)))))..)))).))).)))).))).................... (-23.35 = -22.93 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:55 2006