| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 614,515 – 614,626 |
| Length | 111 |
| Max. P | 0.681576 |
| Location | 614,515 – 614,626 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.12 |
| Mean single sequence MFE | -25.96 |
| Consensus MFE | -20.02 |
| Energy contribution | -20.14 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 614515 111 - 27905053 AAUUCCUUUGUAUUGACUUUUCUGU--UUUGUUUUAGUUGGAUUUGCCAUUUUCUUUGCCAUUCUAUCGCUGGUUAGUCAGCGAAGAGCAUUCAAUCGGCCUGGCCGAUCUGA .....((.......(((......))--).......))(..((((.((((..((..(((...((((.(((((((....)))))))))))....)))..))..)))).))))..) ( -23.04) >DroGri_CAF1 40655 110 - 1 UAUAUAAAUCUAUUGUUCGAUUUGU--AUUCCUU-AGCUGGAUUUGCCAUUCUCGCUGCCGUUCUAUCGCUGGCUGGUUAGCGAGGAGCACUCAAUUGGCCUGGCCGAUUUAA .(((((((((........)))))))--))(((..-....)))..(((..((((((((((((..(.......)..))).))))))))))))...(((((((...)))))))... ( -31.90) >DroSim_CAF1 29364 111 - 1 AAUUCAAUUGUAUUGACUUUUCUGU--UUUCUUUUAGUUGGAUUUGCCAUUUUCUCUGCCAUUCUAUCGCUGGUUAGUCAGCGAAGAGCAUUCAAUUGGCCUGGCCGAUCUGA ....((((((....(((......))--)......))))))((((.((((........((((((((.(((((((....)))))))))))........)))).)))).))))... ( -25.60) >DroEre_CAF1 33474 111 - 1 AAUUCAAUUGGAUUAACUUCUCUGU--AAUGUUUUAGUUGGAUUUCCCGUUUUCUUUGCCAUUCUAUCGCUGGUUAGUCAGCGAAGAGCAUUCAAUUGGCUUGGCCGAUCUGA ((((((((((((...((......))--.....))))))))))))............(((...(((.(((((((....))))))))))))).(((((((((...)))))).))) ( -25.50) >DroYak_CAF1 39663 111 - 1 AAUUCAGUUUGAUUGACAUUUUUAU--AAUGUUUUAGUUGGACUUGCCUUUUUCUUUGCCAUUCUAUCGCUGGUUAGUCAGCGAAGAGCAUUCAAUUGGCUUGGCCGAUCUUA ...((((((..(((((((((.....--))))))..)))..)))).(((..((....(((...(((.(((((((....)))))))))))))...))..)))......))..... ( -26.90) >DroAna_CAF1 35836 110 - 1 AGUUGA---UAAUUAACAUUAUUUUUAAAUAUUCCAGUUGGAUUUGCCAUUCUCUUUGCCCUUCUAUCGCUGGCUAGUCAAUGAGGAGCAUUCCAUUGGCUUGGCUGAUCUGA .(((((---...)))))....................(..((((.((((........(((...........))).((((((((.(((...))))))))))))))).))))..) ( -22.80) >consensus AAUUCAAUUGUAUUGACUUUUCUGU__AAUGUUUUAGUUGGAUUUGCCAUUUUCUUUGCCAUUCUAUCGCUGGUUAGUCAGCGAAGAGCAUUCAAUUGGCCUGGCCGAUCUGA ....................................(((((....((((.......(((...(((.(((((((....)))))))))))))......))))....))))).... (-20.02 = -20.14 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:10 2006