Locus 10099

Sequence ID 3R_DroMel_CAF1
Location 27,056,372 – 27,056,463
Length 91
Max. P 0.711614
window16079

overview

Window 9

Location 27,056,372 – 27,056,463
Length 91
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 85.12
Mean single sequence MFE -22.80
Consensus MFE -16.68
Energy contribution -16.72
Covariance contribution 0.04
Combinations/Pair 1.15
Mean z-score -1.82
Structure conservation index 0.73
SVM decision value 0.38
SVM RNA-class probability 0.711614
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27056372 91 + 27905053
-----AACUAUCUUCGGAUCCCCGGAGCUCCAUCGAGUUUUCAGUCAGGAGAUGCAAGU------CAAAUCCCUACCCGAUAACUCACAUUCAAACUUUCAG
-----......((((((....)))))).......(((((.((.(..(((.(((......------...))))))..).)).)))))................ ( -19.60)
>DroSec_CAF1 103618 86 + 1
-----AACUGUCUUCGGAUCCCCGGAGCUCCAUCGAGUUUUCGGCCAGGAGAUGCAAGU------AAAAUCC-----CGAUAACUCGCAUUCAAACUUUCAG
-----..(((.((((((....))))))......((((((.((((......(((......------...))))-----))).))))))............))) ( -19.00)
>DroSim_CAF1 106405 91 + 1
-----AACUGUCUUCGGAUCCCCGGAGCCCCAUCGAGUUUUCGGCCAGGAGAUGCAAGU------AAAAUCCCUACCCGAUAACUCGCAUUCAAACUUUCAG
-----..(((.((((((....))))))......((((((.((((..(((.(((......------...))))))..)))).))))))............))) ( -26.40)
>DroEre_CAF1 110927 91 + 1
-----AACCGUCUUCGGAUCUCCGAAGCCCCAUCGAGUUUUCAGCCAGGAGAUGCAAGU------AGUAUCCCUACCCGAUAGCUCACAUUCAAACUUUCAG
-----....(.((((((....)))))))......(((((.((.(..(((.(((((....------.))))))))..).)).)))))................ ( -24.30)
>DroYak_CAF1 106974 102 + 1
UCUAUAAAUGUCUUCGGAUAUCCGAAGCCCCAUCGAGUUUUCAGCCAGGAGAUGCAAGUAUCCCUAGUGUCCCUACCAGAUAACUCGCAUUCAAACUUUCAG
......(((((((((((....)))))).......(((((.((.(..(((.(((((.((.....)).))))))))..).)).))))))))))........... ( -24.70)
>consensus
_____AACUGUCUUCGGAUCCCCGGAGCCCCAUCGAGUUUUCAGCCAGGAGAUGCAAGU______AAAAUCCCUACCCGAUAACUCGCAUUCAAACUUUCAG
...........((((((....)))))).......(((((.((.(..(((.(((...............))))))..).)).)))))................ (-16.68 = -16.72 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:52 2006