Locus 10097

Sequence ID 3R_DroMel_CAF1
Location 27,054,352 – 27,054,445
Length 93
Max. P 0.967592
window16076

overview

Window 6

Location 27,054,352 – 27,054,445
Length 93
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 97.19
Mean single sequence MFE -12.30
Consensus MFE -12.30
Energy contribution -12.30
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.34
Structure conservation index 1.00
SVM decision value 1.61
SVM RNA-class probability 0.967592
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27054352 93 - 27905053
UGUUGUUUGAGCAGGAGUAAGAGGUUUCUGCAAUAGGUAGAGAGAAAAGGAAAAGAAGUAACGAAAAACAUAAAAUAAAAACAAAACAAACGA---
..(((((((.(((((((.......)))))))..........................((........)).................)))))))--- ( -11.90)
>DroSim_CAF1 104394 93 - 1
UGUUGUUUGAGCAGGAGUAAGAGGUUUCUGCAAUAGGUAGAGAGAAAAGGAAAAGAAGUAACGAAAAACAUAAAAUAAAAACAAAACAAACGA---
..(((((((.(((((((.......)))))))..........................((........)).................)))))))--- ( -11.90)
>DroEre_CAF1 108861 94 - 1
UGUUGUUUGAGCAGGAGUAAGAGGUUUCUGCAAUAGGUAGA--GAAAAGGAAAAGAAGUAACGAAAAACAUAAAAUAAAAACAAAACAAACGAAAC
..(((((((.(((((((.......)))))))..........--..............((........)).................)))))))... ( -12.70)
>DroYak_CAF1 104891 94 - 1
UGUUGUUUGAGCAGGAGUAAGAGGUUUCUGCAAUAGGUAGAGAGAAAAGGAAAAGAAGUAACGAAAAACAUAAAAUAAAAACAAAACAAACGAA--
..(((((((.(((((((.......)))))))..........................((........)).................))))))).-- ( -12.70)
>consensus
UGUUGUUUGAGCAGGAGUAAGAGGUUUCUGCAAUAGGUAGAGAGAAAAGGAAAAGAAGUAACGAAAAACAUAAAAUAAAAACAAAACAAACGA___
..(((((((.(((((((.......)))))))..........................((........)).................)))))))... (-12.30 = -12.30 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:49 2006