Locus 10096

Sequence ID 3R_DroMel_CAF1
Location 27,053,056 – 27,053,147
Length 91
Max. P 0.999423
window16075

overview

Window 5

Location 27,053,056 – 27,053,147
Length 91
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 88.83
Mean single sequence MFE -37.23
Consensus MFE -35.06
Energy contribution -34.78
Covariance contribution -0.27
Combinations/Pair 1.27
Mean z-score -2.98
Structure conservation index 0.94
SVM decision value 3.59
SVM RNA-class probability 0.999423
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27053056 91 - 27905053
--------CUGCUGCUGGGUACUACCAUUCGUGGUGGUGAAGGUCAGCGUUUGGGUGUUUUUGGUGGGUGAGGUGGCCGGCGUGAGAAUGCCCAAGUUG
--------..((((((...((((((((....))))))))..)).)))).((((((((((((((((.(((......))).)).))))))))))))))... ( -38.80)
>DroSec_CAF1 100326 91 - 1
--------CUGCUGCUGGGUACUACCAUUCGUGGUGGUGAAGGUCAGCGUUUGGGUGUUUUUGGUGGGUGAGGUGGCCGGCGUGAGAAUGCCCAAGUUG
--------..((((((...((((((((....))))))))..)).)))).((((((((((((((((.(((......))).)).))))))))))))))... ( -38.80)
>DroSim_CAF1 103102 91 - 1
--------CUGCUGCUGGGUACUACCAUUCGUGGUGGUGAAGGUCAGCGUUUGGGUGUUUUUGGUGGGUGAGGUGGCCGGCGUGAGAAUGCCCAAGUUG
--------..((((((...((((((((....))))))))..)).)))).((((((((((((((((.(((......))).)).))))))))))))))... ( -38.80)
>DroEre_CAF1 107598 91 - 1
--------CUGCUGCUGGGUACUGCCAUUCGUGGUGGUGAAGGUGAGCGUUUGGGUGUUUUUGGUGGGUGAGGUGGCCGGCGUGAGAAUGCCCAAGUUG
--------..((((((...(((..(((....)))..)))..))).))).((((((((((((((((.(((......))).)).))))))))))))))... ( -35.90)
>DroYak_CAF1 103593 91 - 1
--------CUGCUGCUGGGUACUGCCAUUCGUGGUGGUGAAGGUCAGCGUUUGGGUGUUUUUGGUGGGUGAGGUGGCCGGCGUGAGAAUGCCCAGGUUG
--------..((((((...(((..(((....)))..)))..)).)))).((((((((((((((((.(((......))).)).))))))))))))))... ( -37.50)
>DroMoj_CAF1 133407 99 - 1
UGCUGUUGCUGCUGCUGCUGACUGGCGGCCGUGGUAGUGAAAGUCAACGUCUGUGUAUUCUUGGUGGGCGAUGUGGCCGGCGUCAGUAUGCCCAGGUUA
........(((..(((((((((.(.(((((.......((.....))(((((.((.(((.....))).)))))))))))).)))))))).)).))).... ( -33.60)
>consensus
________CUGCUGCUGGGUACUACCAUUCGUGGUGGUGAAGGUCAGCGUUUGGGUGUUUUUGGUGGGUGAGGUGGCCGGCGUGAGAAUGCCCAAGUUG
..........((((((...((((((((....))))))))..)).)))).((((((((((((((((.(((......))).)).))))))))))))))... (-35.06 = -34.78 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:48 2006