Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 27,052,887 – 27,052,986 |
Length | 99 |
Max. P | 0.989325 |
Location | 27,052,887 – 27,052,986 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 78.46 |
Mean single sequence MFE | -36.75 |
Consensus MFE | -21.36 |
Energy contribution | -21.03 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.25 |
Mean z-score | -3.25 |
Structure conservation index | 0.58 |
SVM decision value | 2.16 |
SVM RNA-class probability | 0.989325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27052887 99 + 27905053 GCAAUCUGAUGGCUGCUAAUGCCACAGCCAGCAAGAUACUCAAGCUGGCCACCAAUGUGGCCAAUGGUG-----GCUCCUCU----------AUGGACAUUGUGCAGCAGCAAC ((.((((..((((((.........))))))...))))......(((((((((((.((....)).)))))-----))(((...----------..))).......)))).))... ( -36.70) >DroEre_CAF1 107429 99 + 1 GUAAUCUGAUGGCUGCCAAUGCCACAGCCAGCAAGAUACUCAAGCUGGCCACCAAUGUGGCCAAUGGUG-----GCUCCACU----------AUGGACAUUGUGCAGCAGCAAC ......((...(((((((((((((((((((((..(.....)..))))))......)))))(((.(((((-----....))))----------)))).))))).)))))..)).. ( -39.00) >DroWil_CAF1 108613 114 + 1 GCAAUUUAAUGGCUGCCAAUGCAACGGCCAAUAAGAUCCUCAAAUUGGCCACCAAUGUGGCAAAUGGCGUUGUCGCUGCUCCACCGCAUGUGGUGGAUAUUGUUCAGCAGCACA ...........(((((....(((..(((((((..(.....)..)))))))......(((((((......))))))))))(((((((....))))))).........)))))... ( -40.00) >DroYak_CAF1 103424 99 + 1 GCAAUCUGAUGGCUGCCAAUGCUACAGCCAGCAAGAUACUCAAGCUGGCCACCAAUGUGGCCAACGGUG-----GCUCCUCU----------AUGGACAUUGUGCAGCAGCAAC ......((...((((((((((.....((((.(..(.....)..(.(((((((....))))))).)).))-----))(((...----------..)))))))).)))))..)).. ( -37.00) >DroMoj_CAF1 133198 88 + 1 --AAUUUAAUAGCCGCCAAUGCCACGGCCAACAAAAUACUCAAGUUGGCCACCAAUGUGGCAAACGGCG------------------------UGGACAUUGCACAGCAACACA --.........((((....(((((((((((((...........)))))))......))))))..))))(------------------------((....((((...))))))). ( -29.00) >DroAna_CAF1 110498 99 + 1 GCAAUCUUAUGGCUGCCAAUGCAACGGCCAGCAAGAUUCUCAAGCUGGCCACCAAUGUGGCCAACGGCG-----GCUCCGCC----------GUCGACAUCGUACAGCACCAGC ((((((((.((((((.........))))))..)))))).....(((((((((....))))))..(((((-----((...)))----------)))).........)))....)) ( -38.80) >consensus GCAAUCUGAUGGCUGCCAAUGCCACAGCCAGCAAGAUACUCAAGCUGGCCACCAAUGUGGCCAACGGCG_____GCUCCUCU__________AUGGACAUUGUGCAGCAGCAAC ...........(((((((((((((..((((((...........))))))(((....)))((.....)).........................))).)))))....)))))... (-21.36 = -21.03 + -0.33)
Location | 27,052,887 – 27,052,986 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.46 |
Mean single sequence MFE | -42.38 |
Consensus MFE | -31.49 |
Energy contribution | -30.43 |
Covariance contribution | -1.05 |
Combinations/Pair | 1.39 |
Mean z-score | -3.59 |
Structure conservation index | 0.74 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980544 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27052887 99 - 27905053 GUUGCUGCUGCACAAUGUCCAU----------AGAGGAGC-----CACCAUUGGCCACAUUGGUGGCCAGCUUGAGUAUCUUGCUGGCUGUGGCAUUAGCAGCCAUCAGAUUGC ...(((((((....(((.((((----------((....((-----(((((.((....)).)))))))((((..(.....)..)))).))))))))))))))))........... ( -40.90) >DroEre_CAF1 107429 99 - 1 GUUGCUGCUGCACAAUGUCCAU----------AGUGGAGC-----CACCAUUGGCCACAUUGGUGGCCAGCUUGAGUAUCUUGCUGGCUGUGGCAUUGGCAGCCAUCAGAUUAC .(((..(((((.(((((.((((----------(((...((-----(((((.((....)).)))))))((((..(.....)..)))))))))))))))))))))...)))..... ( -46.80) >DroWil_CAF1 108613 114 - 1 UGUGCUGCUGAACAAUAUCCACCACAUGCGGUGGAGCAGCGACAACGCCAUUUGCCACAUUGGUGGCCAAUUUGAGGAUCUUAUUGGCCGUUGCAUUGGCAGCCAUUAAAUUGC ((.(((((..(......((((((......))))))((((((....(((((..........)))))((((((..(.....)..)))))))))))).)..)))))))......... ( -45.40) >DroYak_CAF1 103424 99 - 1 GUUGCUGCUGCACAAUGUCCAU----------AGAGGAGC-----CACCGUUGGCCACAUUGGUGGCCAGCUUGAGUAUCUUGCUGGCUGUAGCAUUGGCAGCCAUCAGAUUGC .(((..(((((.((((((((..----------...))(((-----(...(((((((((....)))))))))...(((.....)))))))...)))))))))))...)))..... ( -39.20) >DroMoj_CAF1 133198 88 - 1 UGUGUUGCUGUGCAAUGUCCA------------------------CGCCGUUUGCCACAUUGGUGGCCAACUUGAGUAUUUUGUUGGCCGUGGCAUUGGCGGCUAUUAAAUU-- ......(((((.(((((.(((------------------------(.......(((.....)))(((((((...........))))))))))))))))))))).........-- ( -33.80) >DroAna_CAF1 110498 99 - 1 GCUGGUGCUGUACGAUGUCGAC----------GGCGGAGC-----CGCCGUUGGCCACAUUGGUGGCCAGCUUGAGAAUCUUGCUGGCCGUUGCAUUGGCAGCCAUAAGAUUGC ((..((((....((((((((((----------((((....-----))))))))...))))))..(((((((..(.....)..)))))))...))))..)).............. ( -48.20) >consensus GUUGCUGCUGCACAAUGUCCAU__________AGAGGAGC_____CACCAUUGGCCACAUUGGUGGCCAGCUUGAGUAUCUUGCUGGCCGUGGCAUUGGCAGCCAUCAGAUUGC ......(((((.(((((.((((........................((((.((....)).))))(((((((..(.....)..)))))))))))))))))))))........... (-31.49 = -30.43 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:47 2006