| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,051,835 – 27,051,935 |
| Length | 100 |
| Max. P | 0.528580 |
| Location | 27,051,835 – 27,051,935 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.19 |
| Mean single sequence MFE | -26.18 |
| Consensus MFE | -14.71 |
| Energy contribution | -14.82 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.56 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27051835 100 - 27905053 UCCUCGGUGGUCCAGGAGUCGUUGCUAUCCUCCGACUCCGUGACCACCAUUUCGUCCUCGUCCAUUUCGCUGCCUAAAUGGGUGCAGAAUCA-GGAGUUU-G----- ((((.(((((((..(((((((..(.....)..)))))))..)))))))........(((..((((((........))))))..).))....)-)))....-.----- ( -36.60) >DroVir_CAF1 139923 100 - 1 UCCUCGGUGGUCCAAGAAUCAUUGCUAUCCUCCGAUUCGGUGACAACCAUUUCAUCUUCGUCCAUUUCGCUGCCUACAGAAGUGUACGUUG------UUUAGGACA- ((((.(((.(((...(((((.............)))))...))).)))..........(((.((((((..........)))))).)))...------...))))..- ( -21.92) >DroEre_CAF1 106367 100 - 1 UCCUCGGUGGUCCAGGAGUCGUUGCUAUCCUCCGACUCCGUGACCACCAUUUCGUCCUCGUCCAUUUCGCUGCCUA-AUGGGUGUAGAAUCA-GCAGUUUAG----- .....(((((((..(((((((..(.....)..)))))))..)))))))......((..(..(((((.........)-))))..)..))....-.........----- ( -33.30) >DroWil_CAF1 107429 100 - 1 UCCUCAGUGGUCCAUGAAUCAUCGCUGUCCUCCGAUUCGGUGACCACCAUUUCAUCCUCAUCCAUUUCGCUACCUAGACAA-UGGAGAGACAAAGAGAGA-G----- (((((.((((((..((((((.............))))))..)))))).........(((.((((((((........)).))-))))))).....))).))-.----- ( -28.42) >DroMoj_CAF1 132075 104 - 1 UCCUCGGUGGUCCAAGAGUCAUUGCUGUCCUCCGAUUCAGAAACAACCAUUUCAUCAUCGUCCAUUUCACUACCUGCA-AAGUGCGAGAUAA-GAU-AUUAGCUCAC ..(((((((((....(((((.............))))).((((......))))...............)))))).((.-....)))))....-...-.......... ( -16.42) >DroAna_CAF1 109538 85 - 1 UCCUCGGUGGUCCAAGAGUCAUUGCUAUCCUCCGACUCAGUGACUACCAUUUCAUCUUCAUCCAUUUCGCUGCCUGCAAGA----AGAA------------------ .....(((((((...(((((.............)))))...)))))))..(((.((((((..((......))..)).))))----.)))------------------ ( -20.42) >consensus UCCUCGGUGGUCCAAGAGUCAUUGCUAUCCUCCGACUCAGUGACCACCAUUUCAUCCUCGUCCAUUUCGCUGCCUACAUAAGUGCAGAAUCA_G_A_UUU_G_____ .....(((((((...(((((.............)))))...)))))))........................................................... (-14.71 = -14.82 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:45 2006