| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,044,640 – 27,044,740 |
| Length | 100 |
| Max. P | 0.644679 |
| Location | 27,044,640 – 27,044,740 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 78.23 |
| Mean single sequence MFE | -30.39 |
| Consensus MFE | -19.84 |
| Energy contribution | -19.98 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27044640 100 + 27905053 UAAAAAUGGGGAAG----------GGG-UACUUACGGCGCUCCUGGCAACUGGGGCAAUGCGAGAGACUGUCGACACGAACAUUUUCGGUUGAAUUUCCUUUUU---GUUUUGC (((((..(((((((----------.((-(.((..((..(((((.(....).)))))..))..))..))).(((((.((((....))))))))).)))))))...---.))))). ( -29.50) >DroPse_CAF1 103904 110 + 1 CAACAAGAGUAACGUCACAUUUUCGUC-UACUUACGGCGCUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUUUUCAGUUGAUUUUUUUUUUU---GAUUGGC (((((((((...............(((-(.((..((..(((((((....)))))))..))..)))))).((((((..(((....))).)))))).....)))))---).))).. ( -31.30) >DroWil_CAF1 100959 108 + 1 CUACACAAUUGUUGUAA-AUU---UUA-UACUUACGGCGCUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUUUUUAGUUGAUUUCUUUUUUUUG-GAUUGGC .....((((((((((((-...---...-...)))))))(((((((....))))))).....((((((..((((((.............)))))).)))))).....-))))).. ( -30.72) >DroYak_CAF1 94968 98 + 1 UAAAAAGGGGG-------------GGUUUACUUACGGCGAUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUUUUUGGUUGAUUUUCCUUUUU---GUUUUGC ((((((((..(-------------(((((.((..((....(((((....)))))....))..)))))))((((((.((((....)))))))))))..)))))))---)...... ( -31.60) >DroAna_CAF1 103149 101 + 1 GACUCAUUCG--AA----------UUG-UACUUACAGCGCUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUCUUCGGUUGAUUUUUUUUUUUUAGAUUUUGC .........(--((----------((.-..((..((..(((((((....)))))))..))..))(((..((((((.((((....))))))))))..))).......)))))... ( -27.90) >DroPer_CAF1 97620 110 + 1 CAACAAGAGUAACGUCACAUUUUCGUC-UACUUACGGCGCUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUUUUCAGUUGAUUUUUUUUUUU---GAUUGGC (((((((((...............(((-(.((..((..(((((((....)))))))..))..)))))).((((((..(((....))).)))))).....)))))---).))).. ( -31.30) >consensus CAACAAGAGGGAAG__________GUC_UACUUACGGCGCUCCUGGCAACGGGGGCAAUGCGAGAGACUGUCGACACGAACAUUUUCAGUUGAUUUUUUUUUUU___GAUUGGC ..................................(((((((((((....))))))).......((((.(((((...)).))).)))).))))...................... (-19.84 = -19.98 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:44 2006