Locus 10090

Sequence ID 3R_DroMel_CAF1
Location 27,043,182 – 27,043,281
Length 99
Max. P 0.620763
window16064

overview

Window 4

Location 27,043,182 – 27,043,281
Length 99
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.22
Mean single sequence MFE -36.65
Consensus MFE -24.18
Energy contribution -23.43
Covariance contribution -0.75
Combinations/Pair 1.28
Mean z-score -1.36
Structure conservation index 0.66
SVM decision value 0.18
SVM RNA-class probability 0.620763
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27043182 99 - 27905053
UU--GCGGCUUCAUUUCCCAGCAGGAAACCUGUGUGAUUGCAGGGCGAAAGUACCAGAAAUCCUGCUACCAGGU-GUUGCCGUUGCCC-CCG---GUGACCGCCGC
..--(((((..........(((((((..(((((......)))))((....))........))))))).....(.-((..(((......-.))---)..)))))))) ( -39.20)
>DroPse_CAF1 102589 104 - 1
UC-GGAGGCUUAAUUUCCUAGCAGGAAACCUGUGUGAUUGCAGGACGAAAGUACCAGAAAUACUGCGGCUUGGC-GUUGCCAUCGGCGCUCGCGUCUGACUGCCGC
((-(((.((...........((((....(((((......)))))((....))..........)))).....(((-((((....))))))).)).)))))....... ( -32.60)
>DroEre_CAF1 97420 98 - 1
UU--GCGGCUCCAUUUCCCAGCAGGAAACCUGUGUGAUUGCAGGGCGAAAGUACCAGAAAUCCUGCUACCAGGC-GUUGCCGUUCCC--UCG---GGGACCGCCGC
..--(((((..........(((((((..(((((......)))))((....))........)))))))....(((-...)))(((((.--...---))))).))))) ( -40.30)
>DroYak_CAF1 93554 98 - 1
UU--GCGGCUCCAUUUCCCAGCAGGAAACCUGUGUGAUUGCAGGGCGAAAGUACCAGAAAUCCUGCUGCCAGGC-GUUGCCGUUGCC--UCG---GGAACCGCCGC
..--(((((.....((((((((((((..(((((......)))))((....))........)))))))...((((-(.......))))--).)---))))..))))) ( -42.40)
>DroMoj_CAF1 123516 98 - 1
UCGUGGAGCUUCAUUUCCUAGCAGGAAACUUGUGUAAUCACAAGGCGAAAGUACCAGAAAUGCUGCAGCAUGGCUGUUGCCGCAUA-ACCU-------GCCGCCGG
.((.((((......))))..(((((...((((((....))))))((....)).......((((.((((((....)))))).)))).-.)))-------))...)). ( -32.80)
>DroPer_CAF1 96303 104 - 1
UC-GGAGGCUUAAUUUCCUAGCAGGAAACCUGUGUGAUUGCAGGACGAAAGUACCAGAAAUACUGCGGCUUGGC-GUUGCCAUCGGCGCUCGCGUCUGACUGCCGC
((-(((.((...........((((....(((((......)))))((....))..........)))).....(((-((((....))))))).)).)))))....... ( -32.60)
>consensus
UC__GCGGCUUCAUUUCCCAGCAGGAAACCUGUGUGAUUGCAGGGCGAAAGUACCAGAAAUCCUGCUGCCAGGC_GUUGCCGUUGCC__UCG___GUGACCGCCGC
......(((...........((((....((((((....))))))((....))..........)))).....(((....)))....................))).. (-24.18 = -23.43 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:38 2006