| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,041,004 – 27,041,099 |
| Length | 95 |
| Max. P | 0.559796 |
| Location | 27,041,004 – 27,041,099 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 77.96 |
| Mean single sequence MFE | -30.05 |
| Consensus MFE | -15.96 |
| Energy contribution | -16.97 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27041004 95 + 27905053 --------GUUUC---AGGCGUAGUCUUCAGCUUGCGCUGAAGCUUCUCCAGCAUCUCGCGCUCCUGCUGCUCCAGGCGGGCGAUCUUUCCGCUCAGCUUUAGGCC --------((((.---((((...((((.((((..((((.((.(((.....))).))..))))....))))....))))(((((.......))))).)))).)))). ( -31.90) >DroSec_CAF1 88282 97 + 1 ------CCGUUUC---AGGCGCAGUCUUUAGCUUGCGCUGAAGCUUCUCCAGCAUCUCGCGCUCUUGCUGCUCCAAACGGGCGAUCUUUCCGCCCAGCUUUAGGCC ------..((((.---(((((((((....((...((((.((.(((.....))).))..)))).)).))))).......(((((.......))))).)))).)))). ( -32.90) >DroSim_CAF1 91026 97 + 1 ------CGGUCUC---AGGCGCAGUUUUCAGCUUGCGCUGGAGCUUCUCCAGCAUCUCGCGCUCCUGCUGCUCCAAACGGGCGAUCUUUCCGCUCAGCUUUAGGCC ------.(((((.---(((((((((....(((.((.(((((((...)))))))....)).)))...))))).......(((((.......))))).)))).))))) ( -38.80) >DroWil_CAF1 97352 97 + 1 ------CUGCUUCUACAGCUGGAGUC---UGUUUUCCCUGAAGCUUCUCCAGCAUUUCUUGUUCUUGCUGCUCCAAACGGGCCAACUUACCACUCAAUUUCAGGCC ------..((((.....(((((((..---.(((((....)))))..)))))))................((((.....))))...................)))). ( -21.40) >DroYak_CAF1 91353 103 + 1 CCGGAUCGGUUUC---AGGCGCAGUCUUCAGUUUGCCCUGAAGCUUCUCCAGCAUCUCGCGCUCCUGCUGCUCCAAACGGGCGAUCUUUCCGCUCAACUUAAGGCC ..(((..((((((---(((.((((........)))))))))))))..))).((.....((((....)).)).......(((((.......)))))........)). ( -34.10) >DroAna_CAF1 92561 93 + 1 ---------UUUC---UGGAGUGGGUUU-UGUUUAGCCUGCAGCUUCUCCAACAUUUCACGCUCCUGCUGCUCAAGACGCGCUAUCUUACCACUCAGUUUGAGACC ---------....---.((((((.((((-((..((((..(.(((................))).).))))..)))))).)))).........(((.....))).)) ( -21.19) >consensus ______C_GUUUC___AGGCGCAGUCUUCAGCUUGCCCUGAAGCUUCUCCAGCAUCUCGCGCUCCUGCUGCUCCAAACGGGCGAUCUUUCCGCUCAGCUUUAGGCC .................(((((((........)))).((((((((....(((((...........)))))........(((((.......)))))))))))))))) (-15.96 = -16.97 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:37 2006