Locus 10087

Sequence ID 3R_DroMel_CAF1
Location 27,024,290 – 27,024,382
Length 92
Max. P 0.591714
window16061

overview

Window 1

Location 27,024,290 – 27,024,382
Length 92
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 84.03
Mean single sequence MFE -25.63
Consensus MFE -14.38
Energy contribution -15.16
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -3.18
Structure conservation index 0.56
SVM decision value 0.12
SVM RNA-class probability 0.591714
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27024290 92 + 27905053
CGA-AUUUUCAGGGUACUGUAAUCGAGUGAUAUGCGUCAUCGCAUAUAAAUCC--------UGUAAGCAGGAUAACACUUUAACACGUAAACACCUAAGCA
...-......(((.((((((....((((((((((((....)))))))..((((--------((....))))))..)))))..))).)))....)))..... ( -26.50)
>DroPse_CAF1 83708 86 + 1
AAA-----AGAGGGUCCUGUAAUCGAGUGAUAUGCGUCAUCGCAU--AAAUCC--------UCUAAGCAGGAUAACACUUUGGCACGUAAACACCUAAACA
...-----((((.(((((((....(((.((((((((....)))))--)..)))--------))...)))))))....)))).................... ( -21.90)
>DroEre_CAF1 77690 93 + 1
ACAGGAUCUCAGGGUCCUGUAAUCGAGUGAUAUGCGUCAUCGCAUAUAAAUCC--------UCUAAGCUGGAUAACACUUCAGCACGUAAACACCUAAGCA
((((((((....))))))))......((((((((((....)))))))......--------.....((((((......)))))).......)))....... ( -28.80)
>DroYak_CAF1 74517 93 + 1
CAAGGAUCCCAGGGUCCUGUAAUCGAGUGAUAUGCGUCAUCGCAUAUAAAUCC--------UCUAAGCAGGAUAACACUUUAGCACGUAAACACCUAAGCA
..((((((....))))))((..(.((((((((((((....)))))))..((((--------(......)))))..))))).)..))............... ( -25.90)
>DroAna_CAF1 76134 95 + 1
CCA------UAGGGUUCGGAAAUCGAGUGAUAUGCGUCGUCGCAUAUAAAUCCUCUUAUCCUGUAAGCAGGAUAACACUUUAGCACGUAAACACCUAACAC
...------(((((((((......((((((((((((....)))))))........((((((((....))))))))))))).....))..))).)))).... ( -28.80)
>DroPer_CAF1 77420 86 + 1
AAA-----AGAGGGUCCUGUAAUCGAGUGAUAUGCGUCAUCGCAU--AAAUCC--------UCUAAGCAGGAUAACACUUUGGCACGUAAACACCUAAACA
...-----((((.(((((((....(((.((((((((....)))))--)..)))--------))...)))))))....)))).................... ( -21.90)
>consensus
AAA_____ACAGGGUCCUGUAAUCGAGUGAUAUGCGUCAUCGCAUAUAAAUCC________UCUAAGCAGGAUAACACUUUAGCACGUAAACACCUAAGCA
..........(((((..(((..(.((((((((((((....)))))))..((((................))))..))))).)..)))...)).)))..... (-14.38 = -15.16 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:35 2006