| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,008,431 – 27,008,524 |
| Length | 93 |
| Max. P | 0.610894 |
| Location | 27,008,431 – 27,008,524 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 81.64 |
| Mean single sequence MFE | -32.72 |
| Consensus MFE | -26.16 |
| Energy contribution | -26.80 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.610894 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27008431 93 + 27905053 UCCUUUGUCCAGGACAGCCUGGUCCAAGGUGCAGGGGCAAAGUGGCAGGUCGGCCGCAAAGUUCCUGCAAAA---UGAGGAAUAUGU-ACUUUCAGU .((((.(.(((((....))))).).))))(((((((((...(((((......)))))...)))))))))...---....(((.....-...)))... ( -36.20) >DroPse_CAF1 65675 91 + 1 GCCCUUGUCCAGCACGGCCUGGUCCAGGGUGCAGGGGCACAAUGGCAGAUCCGCCGCAAAGUUCCUGC---A---CGGGAAAUAGGUUGUUUUCAAU .............((((((((.(((...((((((((((....((((......))))....))))))))---)---).)))..))))))))....... ( -34.70) >DroEre_CAF1 58646 93 + 1 UCCUUUGUCCAGGACAGCCUGGUCCAGGGUGCAGGGGCACAGUGGAAGGUCGGCGGCAAAGUUCCUGCGAAA---CGAGAUAUAUGU-AUUUUCAGU .((((.(.(((((....))))).).))))(((((((((...((.(........).))...)))))))))...---.((((.......-..))))... ( -28.30) >DroYak_CAF1 58223 93 + 1 UCCUUUGUCCAGGACAGCCUGGUCCAGGGUGCAGGGGCACAGCGGCAGGUCGGCGGCAAAGUUCCUGCGAAA---CGAGGUAUAUGU-AUUUUCAAU .((((.(.(((((....))))).).))))(((((((((...((.((......)).))...)))))))))...---.((((.......-..))))... ( -32.50) >DroAna_CAF1 60339 96 + 1 UCCUUUGUCCAGGACUGCCUGGUCCAGGGUGCAGGGGCAGAGCGGCAGGUCGGCGGCAAAGUUCCUGCAAAUCAACGGAAAUUAUGA-UUUUUAAAA (((.((((((.(((((....))))).)))(((((((((...((.((......)).))...)))))))))...))).)))........-......... ( -33.30) >DroPer_CAF1 59428 86 + 1 GCCCUUGUCCAGCACGGCCUGGUCCAGGGUGCAGGGGCACAAUGGCAGGUCCGCCGCAAAGUUCCUG-----------GAAAUGGGUUGUUUUCAAU ((((...(((((..(((((((..(((..((((....))))..))))))).))).(.....)...)))-----------))...)))).......... ( -31.30) >consensus UCCUUUGUCCAGGACAGCCUGGUCCAGGGUGCAGGGGCACAGUGGCAGGUCGGCCGCAAAGUUCCUGC_AAA___CGAGAAAUAUGU_AUUUUCAAU .((((.(.(((((....))))).).))))(((((((((...((.((......)).))...)))))))))............................ (-26.16 = -26.80 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:29 2006