Locus 10081

Sequence ID 3R_DroMel_CAF1
Location 27,008,031 – 27,008,151
Length 120
Max. P 0.571824
window16053

overview

Window 3

Location 27,008,031 – 27,008,151
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 87.94
Mean single sequence MFE -47.02
Consensus MFE -37.67
Energy contribution -38.90
Covariance contribution 1.23
Combinations/Pair 1.17
Mean z-score -2.03
Structure conservation index 0.80
SVM decision value 0.08
SVM RNA-class probability 0.571824
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27008031 120 + 27905053
UUCGCAGCCCACCGCCUGCUCCUCCUGCCAGUAGCAGCAGGAGUAGAAGGGGCGCAUGUCGUGGAACCACAUGGACAGCGAGGGCACCUUGCUGGCCUCGUUCCAGGGCAUCUUGCCCAG
...(((((((.((..((((((((.((((.....)))).))))))))..)))).))(((((.((((((.....((.((((((((...)))))))).))..)))))).)))))..))).... ( -59.00)
>DroVir_CAF1 86171 120 + 1
UUCGCAGCCAACGGCCUGCUCCUCCUGCCAGUAGCAGCAGGAGUAGAAAGGACGCAUAUCAUGGAACCACAUCGACAGGGAUGGCACCUUGCUGGCCUCGUUCCAGGGCAUCUUGCCUAA
...((.(((...)))((((((((.((((.....)))).)))))))).......))......((((((....(((.(((((......))))).)))....))))))((((.....)))).. ( -43.20)
>DroGri_CAF1 76405 120 + 1
UUCACAGCCGACAGCCUGCUCCUCCUGCCAGAAGCAGCAGGAGUAGAAGGGACGCAUAUCGUGGAACCACAUGGACAGAGAUGGCACUUUGCUGGCCUCAUUCCACGGCAUCUUGCCCAG
...............((((((((.((((.....)))).))))))))..(((....((..(((((((((....))...(((.((((.....))))..))).)))))))..))....))).. ( -43.60)
>DroWil_CAF1 63507 120 + 1
CUCACAGCCUACGGCCUGUUCCUCUUGCCAGGAGCAACAUGUAUAGAAGGGACGCAUGUCAUGGAACCACAUGGACAAUGAGGGCACUUUGCUGGCUUCGUUCCAUGGCAUUUUACCCAA
...((((((...))).(((((((......)))))))...)))......(((....((((((((((.((....))...((((((.((......)).))))))))))))))))....))).. ( -38.40)
>DroMoj_CAF1 79274 120 + 1
CUCACAGCCCACGGACUGCUCCUCCUGCCAGAAGCAGCAGGAGUAGAACGGACGCAUGUCAUGGAACCACAUGGACAGCGAGGGCACCUUGCUGGCCUCAUUCCAGGGCAUCUUGCCCAG
...(((((...((..((((((((.((((.....)))).))))))))..))...)).)))..(((((......((.((((((((...)))))))).))...)))))((((.....)))).. ( -51.70)
>DroAna_CAF1 59965 120 + 1
UUCGCAUCCAACGGCCUGCUCCUCCUGCCAGGCACAGCAGGAGUAGAAGGGACGCAUGUCGUGGAACCACAUGGACAGUGAGGGCACUUUGCUGGCCUCGUUCCAGGGCAUCUUGCCCAG
...((........))((((((((.(((.......))).))))))))..(((....(((((.((((((.....((.(((..(((...)))..))).))..)))))).)))))....))).. ( -46.20)
>consensus
UUCACAGCCAACGGCCUGCUCCUCCUGCCAGAAGCAGCAGGAGUAGAAGGGACGCAUGUCAUGGAACCACAUGGACAGCGAGGGCACCUUGCUGGCCUCGUUCCAGGGCAUCUUGCCCAG
...............((((((((.((((.....)))).))))))))..(((....(((((.((((((.....((.((((((((...)))))))).))..)))))).)))))....))).. (-37.67 = -38.90 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:28 2006