Locus 10080

Sequence ID 3R_DroMel_CAF1
Location 26,999,476 – 26,999,566
Length 90
Max. P 0.505332
window16052

overview

Window 2

Location 26,999,476 – 26,999,566
Length 90
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 83.10
Mean single sequence MFE -23.95
Consensus MFE -15.81
Energy contribution -16.92
Covariance contribution 1.11
Combinations/Pair 1.12
Mean z-score -1.75
Structure conservation index 0.66
SVM decision value -0.06
SVM RNA-class probability 0.505332
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26999476 90 + 27905053
UUCCGCAUCACUGGGAAUAUGGAAAU----------AACGCGGCUGCCAUCAAGCCCGUACAAUUUCCGUUUCCUGUGCGCGCUAACAUACAAAUCCGGA
...(((..(((.(((((.((((((((----------.(((.((((.......)))))))...)))))))))))))))).))).................. ( -27.70)
>DroSec_CAF1 46871 90 + 1
UUCCGCAUCAUUGGGAAUAUGGAAAU----------AACGCGGCUGCCAUCAAGCCCGUACAAUUUCCGUUUCCUGUGCGCGCUAACAUACAAAUCCGGA
...(((((....(((((.((((((((----------.(((.((((.......)))))))...)))))))))))))))))).................... ( -26.90)
>DroSim_CAF1 46944 90 + 1
UUCCGCAUCAUUGGGAAUAUGGAAAU----------AACGCGGCUGCCAUCAAGCCCGUACAAUUUCCGUUUCCUGUGCGCGCUAACAUACAAAUCCGGA
...(((((....(((((.((((((((----------.(((.((((.......)))))))...)))))))))))))))))).................... ( -26.90)
>DroEre_CAF1 49181 89 + 1
UUCCGCAUCAUUGGGAAUAUGGAAAU----------AGCGCGGCUGCCA-CAAGCCCGUACAAUUUCCGUUUCCUGUGCUCGCUAACACACAAAUCCGGA
.((((.......(((((.((((((((----------.(((.((((....-..)))))))...)))))))))))))(((........))).......)))) ( -28.10)
>DroWil_CAF1 51271 92 + 1
UUCCGCUUCAAUGA----AUGGAAAUUCAUCCUCAUAAU---GUUCGCAUCGGUCUCGCACAAUUUCCGUUUCCUGUU-UCGCUGUUACACAAAACCGAA
....((..((..((----(((((((((..........((---(....)))...........)))))))))))..))..-..))................. ( -11.50)
>DroYak_CAF1 47553 98 + 1
UUCCGCAUCAUUGGGAAUAUGGAAAU--AACGAAAUAACGCGGCUGCCAUCAAGCCCGUACAAUUUCCGUUUCCUGUACGCGCUAACAUACAAAUCCGGA
.((((.......(((((.((((((((--.........(((.((((.......)))))))...)))))))))))))(((.(......).))).....)))) ( -22.60)
>consensus
UUCCGCAUCAUUGGGAAUAUGGAAAU__________AACGCGGCUGCCAUCAAGCCCGUACAAUUUCCGUUUCCUGUGCGCGCUAACAUACAAAUCCGGA
.((((.......(((((.((((((((...........(((.((((.......)))))))...)))))))))))))((....)).............)))) (-15.81 = -16.92 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:27 2006