| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,201,498 – 3,201,594 |
| Length | 96 |
| Max. P | 0.588059 |
| Location | 3,201,498 – 3,201,594 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 96.00 |
| Mean single sequence MFE | -30.62 |
| Consensus MFE | -26.98 |
| Energy contribution | -27.98 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3201498 96 + 27905053 CGUUGCCCGAACUGUUUGUGCCAGUUGUUGUGGCAUGUUUCACGUUGGUCAAAACGAACGAGGCCAAUAGACAGCCAGACAGGGACAACAAUGUCU .(((((((.(((((.......)))))(((.((((.(((((...(((((((...........))))))))))))))))))).))).))))....... ( -31.40) >DroSec_CAF1 20987 95 + 1 CGUUGCCCGAACUGUUUGUGUCAGUUGUUGUGGCAUGU-UCACGUUGGUCAAAACGAACGGGGCCAAUAGACAACCAGACAGGGACAACAAUGUCU .(((((((..((.....))(((.((((((.((((.(((-((..(((......))))))))..))))...))))))..))).))).))))....... ( -31.60) >DroSim_CAF1 27827 95 + 1 CGUUGCCCGAACUGUUUGUGCCAGUUGUUGUGGCAUGU-UCACGUUGGUCAAAACGAACGGGGCCAAUAGACAGCCAGACAGGGACAACAAUGUCU .(((((((.(((((.......)))))(((.((((.(((-(...(((((((....(....).))))))).))))))))))).))).))))....... ( -31.30) >DroEre_CAF1 20561 96 + 1 CAUUGCCCGAACUGUUUUUGCCAGUUGUUGUGGCAUGUUUCAUGUUGGUCAAAACGAACGAGGCCAAUAGACAGCCAGACAGGGACAACAAUGUCU ((((((((.(((((.......)))))(((.((((.((((...((((((((...........))))))))))))))))))).)))....)))))... ( -28.20) >consensus CGUUGCCCGAACUGUUUGUGCCAGUUGUUGUGGCAUGU_UCACGUUGGUCAAAACGAACGAGGCCAAUAGACAGCCAGACAGGGACAACAAUGUCU .(((((((.(((((.......)))))(((.((((.(((((...(((((((...........))))))))))))))))))).))).))))....... (-26.98 = -27.98 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:13 2006