| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,998,071 – 26,998,166 |
| Length | 95 |
| Max. P | 0.867398 |
| Location | 26,998,071 – 26,998,166 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 73.33 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -13.97 |
| Energy contribution | -14.95 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.867398 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26998071 95 - 27905053 UUUGGAUUGGAGCGAGUGCCUCGAGC---UGGUUCGCCUGCUUGCUCAUAUCAAAUAUUUGUUUUCAAAAUAUGUGCUAAAUUCUAGGCACA-------CCAGC---U------- .((((....(((((((((...((((.---...))))..))))))))).......((((((.......))))))(((((........))))).-------)))).---.------- ( -25.40) >DroSec_CAF1 45431 102 - 1 UUUGGACUGGAGCAAGUGCCACGGGC---UGGUUCGCCAGCUUGCUCAUAUCAAAUAUUUGUUUUCAAAAUAUGUGCUAAAUUCUAUGCACA-------CCCGC---UCCUCCGA .(((((..(((((..((((...((((---(((....)))))))((.(((((......((((....))))))))).))..........)))).-------...))---)))))))) ( -32.40) >DroSim_CAF1 45504 102 - 1 UUUGGACUGGAGCAAGUGCCUCGGGC---UGGUUCGCCAGCUUGCUCAUAUCAAAUAUUUGUUUUCAAAAUAUGUGCUAAAUUCUAUGCACA-------CCCGC---UCCUCCGA .(((((..(((((..((((...((((---(((....)))))))((.(((((......((((....))))))))).))..........)))).-------...))---)))))))) ( -32.40) >DroEre_CAF1 47686 112 - 1 UUUGGGCUCGAGCAAGUGCCUCGAGC---UGGUUCGCCUGCUUGCUCAUAUCAAAUAUUUGUUUUCAAAAUAUGUGCUAGAUUCUAGGCACAUUCUAUGCCCGCUCCUCCGAUCA ...((((..(((((((((...((((.---...))))..)))))))))........................(((((((........))))))).....))))............. ( -31.50) >DroYak_CAF1 46140 82 - 1 -U---GCUCGAGUGAGUGCCUGGAGCUGCUGGUUCGCCUGCUUGCUCACAUCAAAUAUUUGUUUUCAAAAUAUGUGCUAAAUUCUA----------------------------- -.---....((((.((..(.((((((.((.((....)).))..)))).))....((((((.......)))))))..))..))))..----------------------------- ( -18.60) >DroAna_CAF1 49505 94 - 1 UU-G--CUU-----CAUGCUUCGAGU---CCGUUGGCGCGUUUGCUCAAGUCAAAUAUUUGUUUUGAAAAUAUGUGUUAAACUAUAUGCACC-------ACUUC---UCCUUCUA ..-.--...-----..(((....(((---...(((((((((....(((((.(((....))).)))))....))))))))))))....)))..-------.....---........ ( -15.90) >consensus UUUGGACUGGAGCAAGUGCCUCGAGC___UGGUUCGCCUGCUUGCUCAUAUCAAAUAUUUGUUUUCAAAAUAUGUGCUAAAUUCUAUGCACA_______CCCGC___UCCU_C_A .........((((((((....(((((.....)))))...)))))))).......((((((.......))))))((((..........))))........................ (-13.97 = -14.95 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:25 2006