| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,993,730 – 26,993,844 |
| Length | 114 |
| Max. P | 0.928743 |
| Location | 26,993,730 – 26,993,844 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 79.06 |
| Mean single sequence MFE | -39.42 |
| Consensus MFE | -24.32 |
| Energy contribution | -24.52 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.928743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26993730 114 + 27905053 UUUGUACAUAAAGCUCACCUGGC---CGUUCUGCUCCUUGGCCAUUCGGUGGUACCUCAUGGCCGCCGUCACCGCGAUGGCGGCCACCUCAUCCGUCUGCGAGUUCUGGCCGCCGCU ...........(((.....((((---((..........))))))...((((((..(((.(((((((((((.....)))))))))))........(....)))).....))))))))) ( -45.30) >DroPse_CAF1 49987 112 + 1 -----AUAACUAGCUCACCUUUCCCCCAUUAUCCUCCUUGGCCAGUCGGUGAUAUCGCAUGGCCGCCACCACGGCUAUGCCGGCCACCUCAUCUGUCUGCGUGUUCUGGCCCUCGCU -----......((((((((......(((..........)))......)))))....(((((((((......))))))))).(((((...(((........)))...)))))...))) ( -34.00) >DroSim_CAF1 41245 114 + 1 UUUGCAUAUAAAGCUCACCUGGC---CGUUCUGCUCCUUGGCCAUUCGGUGGUACCUCAUGGCCGCCGUCACCGCGAUGGCGGCCACCUCGUCCGUCUGCGAGUUCUGGCCACCGCU ...........(((.....((((---((..........))))))...((((((......(((((((((((.....))))))))))).(((((......))))).....))))))))) ( -49.40) >DroYak_CAF1 41909 101 + 1 -------------CUCACCUGUC---CGUUCUGCUCCUUGGCCAGUCGGUGGUACCUCAUGGCCGCCGUCACCGCGAUGGCGGCCACCUCGUCCGUCUGCGAGUUCUGGCCCCCGCU -------------..........---......((.....((((((..((.....))...(((((((((((.....))))))))))).(((((......)))))..))))))...)). ( -39.80) >DroAna_CAF1 44175 111 + 1 UAUGUAGAU---CCUUACGUUUC---CAUUCUGCUCCUUUGCCAGACGAUGAAAUCUCAUGGCGGCGGUCACCGCAAUGGCCGCCACCUCGUCCGUCUGCGUGUUCUGGCCCUCGCU .((((((..---..))))))...---......(((....(((((((((((((....))))((.((((((((......)))))))).)).....)))))).)))....)))....... ( -33.80) >DroPer_CAF1 43732 112 + 1 -----AUAACUAGCUCACCUUUCCGCCAUUAUCCUCCUUGGCCAGUCGGUGAUAUCGCAUGGCCGCCACCACGGCUAUGCCAGCCACCUCAUCUGUCUGCGUGUUCUGGCCCUCGCU -----......((((((((.....((((..........)))).....)))))....(((((((((......)))))))))..((((...(((........)))...))))....))) ( -34.20) >consensus _____AUAU__AGCUCACCUGUC___CAUUCUGCUCCUUGGCCAGUCGGUGAUACCUCAUGGCCGCCGUCACCGCGAUGGCGGCCACCUCAUCCGUCUGCGAGUUCUGGCCCCCGCU .......................................((((((..(((((.......((((((((((.......))))))))))..)))))((....))....))))))...... (-24.32 = -24.52 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:24 2006