| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,984,490 – 26,984,597 |
| Length | 107 |
| Max. P | 0.645566 |
| Location | 26,984,490 – 26,984,597 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 81.44 |
| Mean single sequence MFE | -40.30 |
| Consensus MFE | -24.57 |
| Energy contribution | -24.90 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26984490 107 + 27905053 UCGAUGUAGCGUUGCAGGCGCUUUGGCAACCUCAACGUGUCGAUGCCGCUUGGCAGUUGAUUGUGCAUCCGCAUGACGUCGCGGAUACAGCAGCUG--UAAAUU---CAAGU (((((...((((((.(((.((....))..))))))))))))))....((((((((((((.((((..((((((........))))))))))))))))--).....---))))) ( -39.00) >DroPse_CAF1 40355 101 + 1 UCAAUAUAGCGCUGCAGUCGCAUCGGCAGCCUCAAAGUGUCGAUGCCGUUGGGCAGUUGAUUCUGCUCCCGGAGGACAUCGCGAAUGCAGCAGCUG--CAG--------AA- ......((((((((((.(((((((((((.(......)))))))).(((..((((((......)))))).)))........)))).)))))).))))--...--------..- ( -41.00) >DroEre_CAF1 34217 107 + 1 UCGAUGUAGCGUUGCAGGCGCUUUGGCAGCCUCAACGUGUCGAUGCCGUUGGGUAGUUGAUUGUGCAUCCGCAGGACAUCGCGGAUGCAGCAGCUG--GAAAUC---GAAAU (((((.(((((((((..((((.(..((.(((.(((((.((....)))))))))).))..)..))))((((((........))))))))))).))))--...)))---))... ( -46.00) >DroYak_CAF1 32594 107 + 1 UCGAUGUAGCGCUGCAGGCGCUUUGGCAGCCUCAACGUGUCGAUGCCGUUGGGUAGUUGGUUGUGCAUCCGCAGGACAUCGCGGAUGCAGCAGCUG--GAAAUA---CAAAA ....(.(((((((((..((((.(..((.(((.(((((.((....)))))))))).))..)..))))((((((........))))))))))).))))--.)....---..... ( -43.80) >DroAna_CAF1 34211 108 + 1 UCAAUGUAACGCUGCAGUCGCUUCGGCAGCCUCAAGGUGUCGAUUCCAUUGGGCAGUUGGUUGUGAUUACGCAGGACAUCCCGAAUGACACAGCUGCAGAAAUA---GAAA- ...........(((((((.((....)).........(((((.((((....(((..(((..(((((....))))))))..)))))))))))).))))))).....---....- ( -31.80) >DroPer_CAF1 32930 109 + 1 UCAAUAUAGCGCUGCAGUCGCAUUGGCAGCCUCAAAGUGUCGAUGCCGUUGGGCAGUUGAUUCUGCUCCCGGAGGACAUCGCGAAUGCAGCAGCUG--CAGAGGAGGCGAA- ......((((((((((.((((...((((.(......)))))((((((.(((((.(((.......)))))))).)).)))))))).)))))).))))--.............- ( -40.20) >consensus UCAAUGUAGCGCUGCAGGCGCUUUGGCAGCCUCAACGUGUCGAUGCCGUUGGGCAGUUGAUUGUGCAUCCGCAGGACAUCGCGAAUGCAGCAGCUG__GAAAUA___CAAA_ ......((((((((((..(((.((((((.(......)))))))((((....))))(((..(((((....))))))))...)))..)))))).))))................ (-24.57 = -24.90 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:20 2006