Locus 10072

Sequence ID 3R_DroMel_CAF1
Location 26,981,179 – 26,981,282
Length 103
Max. P 0.994473
window16040

overview

Window 0

Location 26,981,179 – 26,981,282
Length 103
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 75.74
Mean single sequence MFE -30.85
Consensus MFE -14.85
Energy contribution -17.24
Covariance contribution 2.39
Combinations/Pair 1.23
Mean z-score -2.98
Structure conservation index 0.48
SVM decision value 2.48
SVM RNA-class probability 0.994473
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26981179 103 + 27905053
CGUGUGAGUAUGCAACUUUCAGCGUGUUCGCGCAAUUUGUUGCUGAAUGCGCCAUUCGCCAUUCGCAAU-------UUUCCAUUUGCCAUUCG-CCAUUUUGAGAGCAACA
.((((((((((((........))))))))))))....((((((((((((.((.....)))))))((((.-------.......))))......-..........))))))) ( -32.50)
>DroPse_CAF1 36506 84 + 1
CGUGUGAGCAUGCAACUG-CAGCAUGUUCGCGCAAUUUGUUGCUGAAUGCCCC------CGUUCGCG----------UUCCGUGCAACAA--------GAGC--GGCAACA
.((((((((((((.....-..))))))))))))..((((((((.((((((...------.....)))----------)))...)))))))--------)...--(....). ( -36.50)
>DroSec_CAF1 28958 86 + 1
CGUGUGAGUAUGCAACUUU---------CGCGCAAUUUGUUGCUGAAUGCGCCA-------UUCGCAAU-------UUUCCAUUCGCCAUUCGGCCAUUUUG--AGCAACA
.(((((((.........))---------)))))....(((((((.((((((...-------..))))..-------.........(((....)))....)).--))))))) ( -24.10)
>DroSim_CAF1 28944 92 + 1
CGUGUGAGUAUGCAACUUU---------CGCGCAAUUUGUUGCUGAAUGCGCCAUUCGCCAUUCGCAAU-------UUUCCAUUUGCCAUUCG-CCAUUUUG--AGCAACA
.(((((((.........))---------)))))....((((((((((((.((.....)))))))((((.-------.......))))......-........--))))))) ( -25.40)
>DroEre_CAF1 31019 108 + 1
CGUGUGAGCAUGCAACUUUCAGAGUGUUGGCACAAUUUGUUGCUGAAUGCGCUAUUCGCCAUUUGCAAUUUUCCAUUUGCCAUUCGCCAUUCG-CCAUUUUG--AGCAACA
.((((.(((((.(........).))))).))))....((((((((((((.((.....((.....((((........)))).....)).....)-))))))..--))))))) ( -27.90)
>DroYak_CAF1 29342 108 + 1
CGUGUGAGCAUGCAACUUUCAGCGUGUUCGCACAAUUUGUUGCUGAAUGCGCCAUACGCCAUUCGCCAUUUGCAAUUUUCCAUUUGCCAUUCG-CCAUUUUG--AGCAACA
.((((((((((((........))))))))))))....((((((((((((.((.....)))))))((.....((((........)))).....)-).......--))))))) ( -38.70)
>consensus
CGUGUGAGCAUGCAACUUUCAGCGUGUUCGCGCAAUUUGUUGCUGAAUGCGCCAUUCGCCAUUCGCAAU_______UUUCCAUUCGCCAUUCG_CCAUUUUG__AGCAACA
.((((((((((............))))))))))....((((((((((((.((.....)))))))((...................)).................))))))) (-14.85 = -17.24 +   2.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:16 2006