Locus 10070

Sequence ID 3R_DroMel_CAF1
Location 26,965,699 – 26,965,796
Length 97
Max. P 0.975752
window16037

overview

Window 7

Location 26,965,699 – 26,965,796
Length 97
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 93.41
Mean single sequence MFE -30.88
Consensus MFE -29.16
Energy contribution -29.16
Covariance contribution 0.00
Combinations/Pair 1.07
Mean z-score -1.51
Structure conservation index 0.94
SVM decision value 1.76
SVM RNA-class probability 0.975752
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26965699 97 - 27905053
UUCUAUUCUUUUU--------CCUCGCUUUAAUGAUCGCUUUGACAAUGCCUUCAAGUGCGAGGACGGCGACAAACGAUGUGGCCUAUCUGAGGAAUGGGGACUG
(((((((((((.(--------((((((.....(((..((.........))..)))...))))))).(((.(((.....))).))).....))))))))))).... ( -32.50)
>DroSec_CAF1 13213 97 - 1
UUCUAUUCUUUUU--------CCUCGCUUUAAUGAUCGCUUUGACAAUGCCUUCAAGUGCGAGGACGGCAACAAACGAUGUGGCCCAUCUGAGGAAUGGGGACUG
(((((((((((.(--------((((((.....(((..((.........))..)))...))))))).(((.(((.....))).))).....))))))))))).... ( -30.00)
>DroSim_CAF1 13494 97 - 1
UUCUAUUCUUUUU--------CCCCGCUUUAAUGAUCGCUUUGACAAUGCCUUCAAGUGCGAGGACGGCGACAAACGAUGUGGCCCAUCUGAGGAAUGGGGACUG
............(--------((((.((((((((.(((((((((........))))).))))....(((.(((.....))).)))))).)))))...)))))... ( -28.50)
>DroEre_CAF1 15267 97 - 1
UUCCAUUCUUUUU--------CCUCGCUUUAAUGAUCGCUUUGACAAUGCCUUCAAGUGCGAGGACGGCGACAAACGAUGUGGCCCAUCUGGGGAACGGGGACGG
((((........(--------((((((.....(((..((.........))..)))...))))))).(((.(((.....))).))).......))))((....)). ( -30.80)
>DroYak_CAF1 13384 105 - 1
UUCCAUUCUUUUUCUUUUUUGCCUCGCUUUAAUGAUCGCUUUGACAAUGCCUUCAAGUGCGAGGACGGCGACAAACGAUGUGGCCCAUCUGAGGAAUGGGUACUG
.((((((((((..........((((((.....(((..((.........))..)))...))))))..(((.(((.....))).))).....))))))))))..... ( -32.60)
>consensus
UUCUAUUCUUUUU________CCUCGCUUUAAUGAUCGCUUUGACAAUGCCUUCAAGUGCGAGGACGGCGACAAACGAUGUGGCCCAUCUGAGGAAUGGGGACUG
.((((((((((..........((((((.....(((..((.........))..)))...))))))..(((.(((.....))).))).....))))))))))..... (-29.16 = -29.16 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:13 2006