Locus 1007

Sequence ID 3R_DroMel_CAF1
Location 3,200,326 – 3,200,445
Length 119
Max. P 0.507667
window1631

overview

Window 1

Location 3,200,326 – 3,200,445
Length 119
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 86.83
Mean single sequence MFE -31.57
Consensus MFE -23.59
Energy contribution -24.15
Covariance contribution 0.56
Combinations/Pair 1.15
Mean z-score -1.38
Structure conservation index 0.75
SVM decision value -0.05
SVM RNA-class probability 0.507667
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3200326 119 - 27905053
AUAGAGUACAAGAUAGUUGUUUAAGGCAAUGGAACAUGUCAGGGGAUAAGUCGGCAAUACGCUGGCUUCGCAAUACUCGUAUGUAAUAACCGAGAGCGGCAACUGCUGUGGAUACUUAA
...((((((.((.(((((((....((((........)))).......((((((((.....))))))))(((....((((...........)))).))))))))))))...).))))).. ( -28.70)
>DroSec_CAF1 19788 119 - 1
AUAGAGUACAAGAUAGUUGUUUACGGCAAUGGAACAUGUCAGUGGAUAAGUCGGCAAUACGCUGGCUUCGCAAUACUCGUAUGUAAUAACCGAGAGCGGCAACUGCUGCGGAUACUUAG
...(((((........((((((((((((........)))).))))))))((((((.....))))))(((((....((((...........))))((((....).))))))))))))).. ( -31.90)
>DroSim_CAF1 26629 119 - 1
AUAGAGUACCAGAUAGUUGUUUACAGCAAUGGAACAUGUCAGUGGAUAAGUCAGCAAUACGCUGGCUUCGCAAUACUCGUAUGUAAUAACCGAGAGCGGCAACUGCUGCGGAUACUUAG
...(((((((.....((((((..((....))..(((((..((((...((((((((.....)))))))).....))))..))))))))))).....(((((....))))))).))))).. ( -36.20)
>DroEre_CAF1 19418 106 - 1
AUAGAGUAAAAAAUAGUUGCCUAAGGCAAUGGA-----UAAGUGGAUAUAUCCGC--------GGCUUCGCAAUACUCGUAUGUAAUAACCGAGUGCGGUAACUGCUGCGUAUACUUAA
...(((((.......((((((...))))))(((-----((........)))))((--------(((.((((...(((((...........))))))))).....)))))...))))).. ( -29.50)
>consensus
AUAGAGUACAAGAUAGUUGUUUAAGGCAAUGGAACAUGUCAGUGGAUAAGUCGGCAAUACGCUGGCUUCGCAAUACUCGUAUGUAAUAACCGAGAGCGGCAACUGCUGCGGAUACUUAA
...(((((.......(((((.....)))))...........(((((...((((((.....)))))))))))..))))).................(((((....))))).......... (-23.59 = -24.15 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:12 2006