Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,962,561 – 26,962,652 |
Length | 91 |
Max. P | 0.784900 |
Location | 26,962,561 – 26,962,652 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 79.12 |
Mean single sequence MFE | -26.41 |
Consensus MFE | -13.57 |
Energy contribution | -13.60 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.31 |
Mean z-score | -2.24 |
Structure conservation index | 0.51 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26962561 91 - 27905053 CC----AAACUUGGCAGCUACAAUUUUUAGGGCCAUUUCAGCUGCCA---CGCUGUUACAUCUGCAUUUUUGCGGGCUAUACAGCGGUGUA----UGUACAU ..----.....((((((((....................))))))))---((((((....((((((....))))))....))))))((((.----...)))) ( -29.25) >DroSec_CAF1 10115 91 - 1 CC----AAACUUGGCAGCUACAAUUUUUAGGGCCAUUUCUGCUGCCA---CGCUGUUACAUCUGCAUUUUUGCGGGCUAUACAGCGGUGUA----UGUACAU ..----.....(((((((......................)))))))---((((((....((((((....))))))....))))))((((.----...)))) ( -28.75) >DroSim_CAF1 10418 95 - 1 CC----AAACUUGGCAGCUACAAUUUUUAGGGCCAUUUCUGCUGCCA---CGCUGUUACAUCUGCAUUUUUGCGGGCUAUACAGCGGUGUAUGUAUGUACAU ..----.....(((((((......................)))))))---((((((....((((((....))))))....))))))((((((....)))))) ( -31.65) >DroEre_CAF1 12235 87 - 1 CC----AAACUUGGCAGCUACAAUUUUUAGGGCCAUUUCUGCUGCCA---CGGUCUUACAUCUGCAUUUUUGCGGACUAUACAGGGAUGUG----UGU---- ..----..((((((((((......................)))))))---.)))......((((((....)))))).((((((....))))----)).---- ( -22.65) >DroYak_CAF1 10143 87 - 1 CC----AAACUUGGCAGCUACAAUUUUUAGGGCCAUUUCUGCUGCCA---CGCUGUUACAUCUGCAUUUUUGCGGGCUUUACACGGCUGUU----UGU---- .(----((((.(((((((......................)))))))---.(((((....((((((....))))))......))))).)))----)).---- ( -26.55) >DroAna_CAF1 10820 82 - 1 CCCCAAAAACUCGACAGUAAAAAUGUCUGAGGCCACUUCGACUGCAGGGUGGCUGUUACAACUGAAUUUUUGUGUGCUAU----------------GU---- ...((((((.((((((.......))))...(((((((..(....)..))))))).........)).))))))........----------------..---- ( -19.60) >consensus CC____AAACUUGGCAGCUACAAUUUUUAGGGCCAUUUCUGCUGCCA___CGCUGUUACAUCUGCAUUUUUGCGGGCUAUACAGCGGUGUA____UGU____ ...........(((((((......................))))))).............((((((....)))))).......................... (-13.57 = -13.60 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:10 2006