| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,961,106 – 26,961,197 |
| Length | 91 |
| Max. P | 0.572269 |
| Location | 26,961,106 – 26,961,197 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 78.84 |
| Mean single sequence MFE | -24.29 |
| Consensus MFE | -19.99 |
| Energy contribution | -20.30 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26961106 91 + 27905053 UGU--UGUGUGCA-----------CUGUGCCUCAUUUUGCGCC--GGCCU----AAUGGCAGGCUCAUCAUUAACUCAGUUAUUGUCAGUUUGGCGCUAAAUUGACAGGC ..(--((.(((((-----------..(((...)))..)))(((--.(((.----...))).))).........)).)))...(((((((((((....))))))))))).. ( -26.00) >DroPse_CAF1 9596 106 + 1 CAAUUUGUGUGUUCUUUGUCCCAGCUCUGCCUCAUUUUGUGUCCUGGCCU----AAUGGCAGGCUCAUCAUUAACUCAGUUAUUGUCAGUUUAGCGCUAAAUUGACAGGC .......((.(((...((....(((.(((((.....(((.((....)).)----)).))))))))...))..))).))....(((((((((((....))))))))))).. ( -25.10) >DroWil_CAF1 9680 86 + 1 ------------A-----------UUGAGGCACAUUUUGUGCCCUUGCCUAUGUAAUAGCUGGCUCAUCAUUAACUCAGUUAUUGUCAGCUUGGUGCUAAAUUGACAGA- ------------(-----------(((((((((.....))))....(((...((....)).)))..........))))))..(((((((.(((....))).))))))).- ( -20.40) >DroYak_CAF1 8693 91 + 1 UGU--UGUGUGCA-----------CUGUGCCUCAUUUUGUGCC--GGCCU----AAUGGCAGGCUCAUCAUUAACUCAGUUAUUGUCAGUUUAGCGCUAAAUUGACAGGC ...--.....(((-----------(((..........((.(((--.(((.----...))).))).)).........))))..(((((((((((....))))))))))))) ( -26.31) >DroAna_CAF1 8992 95 + 1 UGUCCUGUGUGUA-----------CUUUGCCUCAUUUUGUGCCCUGGCCU----AAUGGCAGGCUCAUCAUUAACUCAGUUAUUGUCAGUUUAGCGCCAAAUUGACAGGC .............-----------....(((......((.(((...(((.----...))).))).))................(((((((((......)))))))))))) ( -22.40) >DroPer_CAF1 9568 106 + 1 CAAUUUGUGUGUUCUUUGUCCCAGCUCUGCCUCAUUUUGUGUCCUGGCCU----AAUGGCAGGCUCAUCAUUAACUCAGUUAUUGUCAGUUUAGCGCUAAAUUGACGGGC ...................((((((.(((((.....(((.((....)).)----)).))))))))...................(((((((((....)))))))))))). ( -25.50) >consensus UGU__UGUGUGUA___________CUGUGCCUCAUUUUGUGCCCUGGCCU____AAUGGCAGGCUCAUCAUUAACUCAGUUAUUGUCAGUUUAGCGCUAAAUUGACAGGC ............................(((......((.(((...(((........))).))).))................((((((((((....))))))))))))) (-19.99 = -20.30 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:09 2006