Locus 10066

Sequence ID 3R_DroMel_CAF1
Location 26,960,759 – 26,960,851
Length 92
Max. P 0.561419
window16032

overview

Window 2

Location 26,960,759 – 26,960,851
Length 92
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 76.36
Mean single sequence MFE -21.42
Consensus MFE -15.28
Energy contribution -14.92
Covariance contribution -0.36
Combinations/Pair 1.26
Mean z-score -1.26
Structure conservation index 0.71
SVM decision value 0.06
SVM RNA-class probability 0.561419
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26960759 92 - 27905053
AGGCUCAUGAAUUUAAACCUUGCUUUU---UUUUUGUACAGUGCAUCUUUUGGAUAAAGGGAACUGAGCGGAAAAUGCGGCAAAAGCAAUUGUAC
...................(((((..(---(((((((.((((...(((((.....)))))..)))).))))))))...)))))............ ( -18.70)
>DroSec_CAF1 8343 91 - 1
AGGCUAAUGAAUUUAGACCUUGCUUUU----UUUUGUGCAGUGCAUCUUUUGGGUAAAGGGAACUGAGCGGAAAAUGCGGCAAAAGCAAUUGUAC
.((((((.....)))).))(((((.((----((((((.((((...(((((.....)))))..)))).))))))))...)))))............ ( -22.40)
>DroSim_CAF1 8633 95 - 1
AGGUUAAUGAAUUUAGACCUUGUUUUUUUUUUUUUGCGCAGUGCAUCUUUUGGGUAAAGGGAACUGAGCGGAAAAUGCGGCAAAAGCAAUUGUAC
.((((..........))))((((((((..((((((((.((((...(((((.....)))))..)))).))))))))......))))))))...... ( -21.10)
>DroEre_CAF1 10573 74 - 1
CCGAUCAUG----------------A----AUUUCGAGCAGUGCAUGUUUUG-GUAAAGGGAACUGUGCGAAAUAUGCGGCAAAAGCAAUUGUAC
.(((.....----------------.----...))).(((((((((((((((-.((.((....)).)))))))))))).((....)).))))).. ( -18.50)
>DroYak_CAF1 8413 77 - 1
-CGAGCUGG-------------UUUC----UUUUCGCACAGUGCAUCUUUUGGGUAAAGAGAACUGUGCGGAAAAUGCGGCAAAAGCAAUUGUAC
-...(((.(-------------(..(----((((((((((((...(((((.....)))))..))))))))))))..)..))...)))........ ( -26.40)
>consensus
AGGAUCAUGAAUUUA_ACCUUGCUUUU___UUUUUGCGCAGUGCAUCUUUUGGGUAAAGGGAACUGAGCGGAAAAUGCGGCAAAAGCAAUUGUAC
..............................(((((((.((((...(((((.....)))))..)))).))))))).(((.......)))....... (-15.28 = -14.92 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:08 2006