| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,960,602 – 26,960,700 |
| Length | 98 |
| Max. P | 0.711347 |
| Location | 26,960,602 – 26,960,700 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.07 |
| Mean single sequence MFE | -20.22 |
| Consensus MFE | -14.38 |
| Energy contribution | -14.13 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26960602 98 - 27905053 ----------------ACCAAC-UAAAACAACUGUCAGCAAAUUGCCGUGGGCACGCAAAGCUAAAUGUCUAAUAAACUUUGACAUAUUGAGGCAAAUAUUUCUAUUUGGCAACU----- ----------------.((((.-.........((....))..((((((((....)))........(((((...........))))).....)))))..........)))).....----- ( -15.90) >DroVir_CAF1 9509 115 - 1 AAACAAC---GACAACAAUAACUCGCAACAACUGUCCACAAAUUGCCGCGGGCACGCAAAGCCAAAUGUCUAAUAAACUUUGACAUAUUGAGGCAAAUAUUUCUAUACGUUU--UGUUUC ((((((.---(((...........(((.....))).......((((((((....))).....((((((((...........))))).))).)))))............))))--))))). ( -20.60) >DroPse_CAF1 9317 99 - 1 ---------------GAGCAAC-UAAAACAACUGUCAGCAAAUUGCCGUGGGCACGCAAAGCUAAAUGUCUAAUAAACUUUGACAUAUUGGGGCAAAUAUUUCUAUUUGGUAAAC----- ---------------.....((-((((.....((....))..((((((((....)))....(((((((((...........))))).))))))))).........))))))....----- ( -18.60) >DroGri_CAF1 10335 115 - 1 CAACAACUUGUACGAAAAAAAGUUGCAACAACUGUCCACAAAUUGCCGCGGGCACGCAAUGCCAAAUGUCUAAUAAACUUUGACAUAUUGAGGCAAAUAUUUCAAUUCGUUU--UGU--- ..((((.....(((((....(((((...))))).........((((((((....))).....((((((((...........))))).))).))))).........))))).)--)))--- ( -23.20) >DroWil_CAF1 9424 105 - 1 -----------A---CAACAAC-UAAAACAACUGUUAGCAAAUUGCCGUUGGCACGCAAAGCCAAAUGUCUAAUAAACUUUGACAUAUUGAGGCAAAUAUUUCCAACUGGAAAUUGUUUG -----------.---.......-..((((((...........(((((.(((((.......)))))(((((...........))))).....)))))...(((((....))))))))))). ( -24.40) >DroPer_CAF1 9300 99 - 1 ---------------GAGCAAC-UAAAACAACUGUCAGCAAAUUGCCGUGGGCACGCAAAGCUAAAUGUCUAAUAAACUUUGACAUAUUGGGGCAAAUAUUUCUAUUUGGUAAAC----- ---------------.....((-((((.....((....))..((((((((....)))....(((((((((...........))))).))))))))).........))))))....----- ( -18.60) >consensus _______________CAACAAC_UAAAACAACUGUCAGCAAAUUGCCGUGGGCACGCAAAGCCAAAUGUCUAAUAAACUUUGACAUAUUGAGGCAAAUAUUUCUAUUUGGUAA_U_____ ..........................................(((((...(((.......)))..(((((...........))))).....)))))........................ (-14.38 = -14.13 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:08 2006