Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,958,885 – 26,958,980 |
Length | 95 |
Max. P | 0.973076 |
Location | 26,958,885 – 26,958,980 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 72.73 |
Mean single sequence MFE | -28.59 |
Consensus MFE | -15.47 |
Energy contribution | -17.63 |
Covariance contribution | 2.17 |
Combinations/Pair | 1.00 |
Mean z-score | -2.12 |
Structure conservation index | 0.54 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.973076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26958885 95 - 27905053 GCUGCCUGCAGACUGUCAAAGUCAUUGUCACUCUGCCGGGGGCUAUGG------CUCUAAACAAU-CACAAAAACUAC---GCCG-GGAUACCCCU-UGCCCUUU--------CA ....((.(((((.((.(((.....))).)).))))).))((((...((------(..........-............---)))(-((....))).-.))))...--------.. ( -27.45) >DroSec_CAF1 6467 95 - 1 GCUGCCUGCAGACUGUCAAAAUCAUUGUCAGUCUGCCGGGGGCUAUGG------CUCUACACAAU-CACAAAAACUAC---GCCG-AGAUACCCCU-UACCCUUU--------CA .......((((((((.(((.....))).)))))))).((((.((.(((------(..........-............---))))-))...)))).-........--------.. ( -28.25) >DroSim_CAF1 6751 88 - 1 GCUGCC-------UGUCAAAGUCAUUGUCAGUCUGCCGGGGGCUAUGG------CUCUACACAAU-CACAAAAACUAC---GCCG-GAAUACCCCU-UACCCUUU--------CA ((.(.(-------((.(((.....))).))).).)).((((....(((------(..........-............---))))-.....)))).-........--------.. ( -18.15) >DroEre_CAF1 8642 97 - 1 GCUGCCUGCAGACUGUCAAAGUCAUUGUCAGUCUGCCGGUGGCUAUG-------------ACAAU-CACAAAAGCUGU---GCCG-GGAUACCCUUUUACCCUUUCAGCCGUUCA ((..((.((((((((.(((.....))).)))))))).))..))....-------------.....-.......((((.---...(-((...........)))...))))...... ( -34.40) >DroYak_CAF1 6512 89 - 1 GCUGCCUGCAGACUGACAAAGUCAUUGUCAGUGUGCCGG-GGCUAUG-------------ACAAU-CACUAGAACUGU---GCCGGGGAUACCCUUUUACCCUUU--------CA (((.((.(((.((((((((.....)))))))).))).))-)))....-------------.....-.....(((..((---(..((((...))))..)))...))--------). ( -27.80) >DroAna_CAF1 6516 89 - 1 GCUACCUGCAGACUGUCA-AGUCAUUGUGUGUCGGCCCGGGGCUAUGGCUCUGGCUCUACACAAUUUGCAAAAACUGGCAGGCGG-GUCUU------------------------ ...((((((.((((....-))))((((((((..((((.(((((....))))))))).))))))))((((........))))))))-))...------------------------ ( -35.50) >consensus GCUGCCUGCAGACUGUCAAAGUCAUUGUCAGUCUGCCGGGGGCUAUGG______CUCUACACAAU_CACAAAAACUAC___GCCG_GGAUACCCCU_UACCCUUU________CA (((.((.((((((((.(((.....))).)))))))).)).)))........................................................................ (-15.47 = -17.63 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:05 2006