Locus 10062

Sequence ID 3R_DroMel_CAF1
Location 26,952,526 – 26,952,621
Length 95
Max. P 0.500000
window16027

overview

Window 7

Location 26,952,526 – 26,952,621
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 84.98
Mean single sequence MFE -40.12
Consensus MFE -32.39
Energy contribution -33.62
Covariance contribution 1.23
Combinations/Pair 1.18
Mean z-score -1.54
Structure conservation index 0.81
SVM decision value -0.08
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26952526 95 + 27905053
GCAGGCCCACUUUUCCCGCCGCGCCAAUGUGCAGCUGGGGAAAUCGGAAGUGCCGGCGGACAGAAAACCGCUGGCGAUGCAAUUGUGGGUGGUUC
....(((((((((((((((.((((....)))).)).)))))))...(...(((((((((........)))))))))...)....))))))..... ( -43.50)
>DroSec_CAF1 183 95 + 1
GCAGGCCCACUUCUCCCGCCGCGCCAAUGUGCAGCUGGGGAAAUCGGAAGUGCCGGCGGAGAGAAAACCGCUGGCGAUGCACCUGUGGGUGGUUC
....((((((((((((.((.((((....)))).)).))))))...((...(((((((((........))))))))).....)).))))))..... ( -44.40)
>DroSim_CAF1 183 95 + 1
GCAGGCCCACUUCUCCCGCCGCGCCAAUGUGCAGCUGGGGAAAUCGGAAGUGCCGGCGGAGAGAAAACCGCUGGCGAUGCAACUGUGGGUGGUUC
....((((((((((((.((.((((....)))).)).))))))....(...(((((((((........)))))))))...)....))))))..... ( -43.70)
>DroEre_CAF1 380 95 + 1
GCAGACCCACUUUUCCCGCCGCGCCAACGUGCAGCUGGGGAAAUCGGAACUGCCGGCGGAGAGAAAACCGCUGGCGAUGCAACUGUGGGUGGUUC
....(((((((((((((((.((((....)))).)).))))))).......(((((((((........)))))))))........))))))..... ( -42.50)
>DroYak_CAF1 183 95 + 1
GCAGGCGCACUUCUCCCGCCGCGCCAAUGUGCAGCUGGGGAAAGCGGAAGUGGCGGUGGAUAGGAAACCACUGGCGAUGCAGCUGUGGGUGGUUC
((.((((.........))))))((((.(.((((((((.(....((....))(.((((((........)))))).)..).)))))))).))))).. ( -36.90)
>DroAna_CAF1 175 95 + 1
UCUGGCCCAUUUCUCCCGGAGAGCCCAGCUCCAGCAGGCUAAAGCGGAUAUAGGGACGGAAAAGCGACCACAGGUCAUGCAACUGUGGGUAGUUC
((((.(((.....((((....((((..((....)).))))...).)))....))).))))..(((..((((((.........))))))...))). ( -29.70)
>consensus
GCAGGCCCACUUCUCCCGCCGCGCCAAUGUGCAGCUGGGGAAAUCGGAAGUGCCGGCGGAGAGAAAACCGCUGGCGAUGCAACUGUGGGUGGUUC
....((((((((((((.((.((((....)))).)).))))))....(...(((((((((........)))))))))...)....))))))..... (-32.39 = -33.62 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:04 2006