| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,951,064 – 26,951,166 |
| Length | 102 |
| Max. P | 0.636463 |
| Location | 26,951,064 – 26,951,166 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.84 |
| Mean single sequence MFE | -21.22 |
| Consensus MFE | -14.96 |
| Energy contribution | -15.85 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26951064 102 + 27905053 ----AUAU--------AU-----AUAUGUUAAUCUGCUCAAUCGAUUGAUCAUCGGCCAUUUC-AACAUCUCAAUCGAUCAGAGGCAGGUCGAACAACUAUUGCACGACCACAAUUUAAU ----....--------..-----...(((...((((....(((((((((..............-......))))))))))))).)))(((((..((.....))..))))).......... ( -20.35) >DroSec_CAF1 18756 102 + 1 ----GUAU--------AU-----AUAUGUUAAUCUGCUCAAUCGAUUGAUCAUCGGCCAUUUC-AACAUCUCAAUCGAUCACAGGCAGGUCGAACAACUAUUGCACGACCAAAAUUUAAU ----(((.--------((-----(..((((.(((((((..(((((((((..............-......)))))))))....)))))))..))))..))))))................ ( -19.75) >DroSim_CAF1 18810 102 + 1 ----GUAU--------AU-----AUAUGUUAAUCUGCUCAAUCGAUUGAUCAUCGCCCAUUUC-AACAUCUCAAUCGAUCAGAGGCAGGUCGAACAACUAUUGCACGACCACAAUUUAAU ----....--------..-----...(((...((((....(((((((((..............-......))))))))))))).)))(((((..((.....))..))))).......... ( -20.35) >DroEre_CAF1 21473 101 + 1 ----GUAU--------AU-----AUAUGUUAAUCUGCUCAAUCGAUUGAUCAUCGGCCAUUUC-AACAUCUCAAUCGAUCAG-GGCAGGUCGAACAACUAUUGCAUGACCACAAUUUAAU ----(((.--------((-----(..((((.((((((((.(((((((((..............-......)))))))))..)-)))))))..))))..))))))................ ( -22.75) >DroYak_CAF1 19415 107 + 1 ----UUAU--------AUAUAGUAUAUGUUAAUCUGCUCAAUCGAUUGAUCAUCGGCCAUUUC-AACAUCUCAAUCGAUCAGAGGCAGGUCGAACAACUAUUGCACGACCACAAUUUAAU ----....--------..(((((...((((.((((((((.(((((((((..............-......)))))))))..)).))))))..)))))))))................... ( -20.55) >DroAna_CAF1 18802 104 + 1 CCAUCCAUACAAGCGAAU-----GAAUGUUAAUCUGGCCAGCCGAUUGAUGAUCUGCCAUUCCGAACAUCUCAAUCGA----------GUUGGACGAGUAUUGCUCGGAGCCC-CCUUAU .(((.(((........))-----).))).......((((((((((((((.(((...(......)...)))))))))).----------))))..((((.....))))..))).-...... ( -23.60) >consensus ____GUAU________AU_____AUAUGUUAAUCUGCUCAAUCGAUUGAUCAUCGGCCAUUUC_AACAUCUCAAUCGAUCAGAGGCAGGUCGAACAACUAUUGCACGACCACAAUUUAAU ..........................((((.(((((((..(((((((((.....................)))))))))....)))))))..))))........................ (-14.96 = -15.85 + 0.89)
| Location | 26,951,064 – 26,951,166 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.84 |
| Mean single sequence MFE | -27.78 |
| Consensus MFE | -16.90 |
| Energy contribution | -18.52 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.561309 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26951064 102 - 27905053 AUUAAAUUGUGGUCGUGCAAUAGUUGUUCGACCUGCCUCUGAUCGAUUGAGAUGUU-GAAAUGGCCGAUGAUCAAUCGAUUGAGCAGAUUAACAUAU-----AU--------AUAU---- .......((((((((.(((.....))).))))((((.((.((((((((((...(((-(.......))))..)))))))))))))))).....)))).-----..--------....---- ( -28.50) >DroSec_CAF1 18756 102 - 1 AUUAAAUUUUGGUCGUGCAAUAGUUGUUCGACCUGCCUGUGAUCGAUUGAGAUGUU-GAAAUGGCCGAUGAUCAAUCGAUUGAGCAGAUUAACAUAU-----AU--------AUAC---- ..........(((((.(((.....))).)))))...((((((((((((((...(((-(.......))))..))))))))))..))))..........-----..--------....---- ( -27.20) >DroSim_CAF1 18810 102 - 1 AUUAAAUUGUGGUCGUGCAAUAGUUGUUCGACCUGCCUCUGAUCGAUUGAGAUGUU-GAAAUGGGCGAUGAUCAAUCGAUUGAGCAGAUUAACAUAU-----AU--------AUAC---- .......((((((((.(((.....))).))))((((.((.((((((((((...(((-(.......))))..)))))))))))))))).....)))).-----..--------....---- ( -28.30) >DroEre_CAF1 21473 101 - 1 AUUAAAUUGUGGUCAUGCAAUAGUUGUUCGACCUGCC-CUGAUCGAUUGAGAUGUU-GAAAUGGCCGAUGAUCAAUCGAUUGAGCAGAUUAACAUAU-----AU--------AUAC---- .......(((((((..(((.....)))..)))((((.-(.((((((((((...(((-(.......))))..))))))))))).)))).....)))).-----..--------....---- ( -24.70) >DroYak_CAF1 19415 107 - 1 AUUAAAUUGUGGUCGUGCAAUAGUUGUUCGACCUGCCUCUGAUCGAUUGAGAUGUU-GAAAUGGCCGAUGAUCAAUCGAUUGAGCAGAUUAACAUAUACUAUAU--------AUAA---- .......((((((((.(((.....))).))))((((.((.((((((((((...(((-(.......))))..)))))))))))))))).....))))........--------....---- ( -28.50) >DroAna_CAF1 18802 104 - 1 AUAAGG-GGGCUCCGAGCAAUACUCGUCCAAC----------UCGAUUGAGAUGUUCGGAAUGGCAGAUCAUCAAUCGGCUGGCCAGAUUAACAUUC-----AUUCGCUUGUAUGGAUGG .(((..-.(((((((((((...((((((....----------..)).)))).))))))))..(((.(((.....))).))).)))...))).(((((-----((........))))))). ( -29.50) >consensus AUUAAAUUGUGGUCGUGCAAUAGUUGUUCGACCUGCCUCUGAUCGAUUGAGAUGUU_GAAAUGGCCGAUGAUCAAUCGAUUGAGCAGAUUAACAUAU_____AU________AUAC____ .((((.(((((((((.(((.....))).))))).......((((((((((...(((.(......).)))..))))))))))..)))).))))............................ (-16.90 = -18.52 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:48:01 2006