Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,200,197 – 3,200,289 |
Length | 92 |
Max. P | 0.919275 |
Location | 3,200,197 – 3,200,289 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 94.57 |
Mean single sequence MFE | -24.12 |
Consensus MFE | -22.42 |
Energy contribution | -22.30 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.13 |
Mean z-score | -1.92 |
Structure conservation index | 0.93 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3200197 92 - 27905053 GUAAACUGAUGGCACUCUAUUCUGUUGGGGUGUUGAAUACAACUGAUAUGACACGUUGCGGAACUUGCAAAUUUAUCAGUUUAAUAAUAGUC .((((((((((((((((((......))))))))......................(((((.....)))))...))))))))))......... ( -22.30) >DroSec_CAF1 19659 92 - 1 GUAAACUGAUGGCACUCCAUUCUGUUGGGGUGUUGAAUACAACUGAUAUGACACGUUGCGGAACUUGCAAAUUUAUCAGUUUAAUAAUAGUC .((((((((((((((((((......))))))))......................(((((.....)))))...))))))))))......... ( -24.60) >DroSim_CAF1 26500 92 - 1 GUAAACUGAUGGCACUCCAUUCAGUUGGGGUGUUGAAUACAACUGAUAUGACACGUUGCGGAACUUGCAAAUUUAUCAGUUUAAUAAUAGUC .((((((((((((((((((......))))))))......................(((((.....)))))...))))))))))......... ( -24.60) >DroEre_CAF1 19290 91 - 1 GUAAGCUGGUGGCACUCUAUUCCGUAGGGGUGUUGAAUACCACUGAUACGACACA-UGCGGAACUUGCAAAUUUAUCAGUUUAAUAAUAGUC .(((((((((((((.....(((((((...((((((.((.......)).)))))).-)))))))..))).....))))))))))......... ( -25.00) >consensus GUAAACUGAUGGCACUCCAUUCUGUUGGGGUGUUGAAUACAACUGAUAUGACACGUUGCGGAACUUGCAAAUUUAUCAGUUUAAUAAUAGUC .((((((((((((((((((......))))))))......................(((((.....)))))...))))))))))......... (-22.42 = -22.30 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:11 2006