| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,949,999 – 26,950,089 |
| Length | 90 |
| Max. P | 0.554530 |
| Location | 26,949,999 – 26,950,089 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.75 |
| Mean single sequence MFE | -20.98 |
| Consensus MFE | -16.07 |
| Energy contribution | -16.07 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26949999 90 + 27905053 AAUUCGCUUGCCCUUGCCAUGCAUAAAAUAUGAGGCAACC-GGGGCCAUAACUCAAUUUGCUGCUACAUGCAUC----CCC--UUUCCAUC---------------------UCCCGA-- ...(((...(((((((((...((((...)))).))))...-)))))............(((........)))..----...--........---------------------...)))-- ( -17.00) >DroSec_CAF1 17694 89 + 1 AAUUCUCUUGCCCUUGCCAUGCAUAAAAUAUGAGGCAACC-GGGGCCAUAACUCAAUUUGCUGCUACAUGCAUC----CCC--UUGCCAUC----------------------CCCGA-- .............(((((...((((...)))).))))).(-((((.............(((........)))..----...--.......)----------------------)))).-- ( -18.11) >DroSim_CAF1 17747 90 + 1 AAUUCGCUUGCCCUUGCCAUGCAUAAAAUAUGAGGCAACC-GGGGCCAUAACUCAAUUUGCUGCUACAUGCAUC----CCC--UUGCCAUC---------------------UCCCGA-- .....((..(((((((((...((((...)))).))))...-)))))............(((........)))..----...--..))....---------------------......-- ( -17.50) >DroEre_CAF1 20366 94 + 1 AAUUCGCUUGCCCUUGCCAUGCAUAAAAUAUGAGGCAACC-GGGGCCAUAACUCAAUUUGCUGCUACAUGCAGCAAAUCCC--CCUCCAUC---------------------GCCCGA-- .....((..(((((((((...((((...)))).))))...-))))).........(((((((((.....)))))))))...--........---------------------))....-- ( -27.90) >DroYak_CAF1 18246 92 + 1 AAUUCGCUUGCCCUUGCCAUGCAUAAAAUAUGAGGCAACC-GGGGCCAUAACUCAAUUUGCUGCUACAUGCAGC----UCC--CUUCCAUC---------------------UGCCAAGU .....(((((((((((((...((((...)))).))))...-))))).............(((((.....)))))----...--........---------------------....)))) ( -24.00) >DroAna_CAF1 17560 116 + 1 AAUUCGCUUGCCCUUGCCAUGCAUAAAAUAUGAGGCAAGCAGGGGCCAUAACUCAAUUUGCUGUUACAUGCAUC----CUCGUUUCCCAUUCCCCAUAUUGUAUAUUCCAUAUUCCAAGA .....((((((((.(((...)))........).))))))).((((....(((......(((........)))..----...))).......))))......................... ( -21.40) >consensus AAUUCGCUUGCCCUUGCCAUGCAUAAAAUAUGAGGCAACC_GGGGCCAUAACUCAAUUUGCUGCUACAUGCAUC____CCC__UUUCCAUC_____________________UCCCGA__ .........(((((((((...((((...)))).))))....)))))............(((........)))................................................ (-16.07 = -16.07 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:59 2006