| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,949,406 – 26,949,510 |
| Length | 104 |
| Max. P | 0.581331 |
| Location | 26,949,406 – 26,949,510 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.61 |
| Mean single sequence MFE | -27.55 |
| Consensus MFE | -21.30 |
| Energy contribution | -22.94 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26949406 104 + 27905053 UCAUUUUCCGCAGCGAAAAGUGUAUGUGGCUUUGGGG------AUUAUUGCACAAAGCGCAUAAACUUAUUAAAUAUGCAAAAUGCC-----UC---GUAUUUUUCCUGUGGUAAAUG-- .(((((.((((((.(((((..(((((.(((.......------......((.....))(((((...........))))).....)))-----.)---))))))))))))))).)))))-- ( -29.90) >DroSec_CAF1 17104 104 + 1 UCAUUUUCCGCAGCGAAAAUUGUAUGUGGCUUUGGGG------AUUAUUGCACAAAGCGCAUAAACUUAUUAAAUAUGCAAAAUGGC-----UC---UUAUUUUUCCUGUGGUAAAUG-- .(((((.((((((.(((((.((...((.((((((.(.------(....).).))))))(((((...........)))))......))-----..---.)).))))))))))).)))))-- ( -27.80) >DroSim_CAF1 17157 104 + 1 UCAUUUUCCGCAGCGAAAAUUGUAUGUGGCUUUGGGG------AUUAUUGCACAAAGCGCAUAAACUUAUUUAAUAUGCAAAAUGCC-----UC---UUAUUUUUCCUGUGGUAAAUG-- .(((((.((((((.(((((..((.((((((((((.(.------(....).).)))))).)))).))...........((.....)).-----..---....))))))))))).)))))-- ( -27.30) >DroEre_CAF1 19786 104 + 1 UCAUUUUCCGCAGCGAAAAGUGUUUGUGGCUUUGGGG------AUUAUUGCACAAAGCGCAUAAACUUAUUAAAUAUGCAAAAUGCC-----UC---UUAUUUUUCCUCUGGUAAAUG-- .(((((.(((.((.((((((((((((((((((((.(.------(....).).)))))).)))))))...........((.....)).-----..---..))))))))).))).)))))-- ( -26.60) >DroYak_CAF1 17630 104 + 1 UCAUUUUCCGCAGCGAAAAGUGUUUGUGGCUUUGGGG------AUUAUUGCACAAAGCGCAUAAACUUAUUAAAUAUGCAAAAUGCC-----UC---UUAUUUUUCCUGUGCCAAAUG-- .(((((..(((((.((((((((((((((((((((.(.------(....).).)))))).)))))))...........((.....)).-----..---..))))))))))))..)))))-- ( -28.80) >DroAna_CAF1 16868 113 + 1 GGG-----GGCAGGGUA--GGGUACUUGGCAUUGGGGAUUCGGAUUAUUGCACAAAGCGCAUAAAGUUAUUAAAUAUGCAAAAUGCUCUCUCUCUGUUUUUUUUUUCUGCGGUAAAUGCA (((-----(((((((.(--(((((....((.((((.(((.......))).).))).))(((((...........)))))....))))))..)))))))))).......(((.....))). ( -24.90) >consensus UCAUUUUCCGCAGCGAAAAGUGUAUGUGGCUUUGGGG______AUUAUUGCACAAAGCGCAUAAACUUAUUAAAUAUGCAAAAUGCC_____UC___UUAUUUUUCCUGUGGUAAAUG__ .(((((.((((((.((((((((......((((((..................))))))(((((...........)))))...................)))))))))))))).))))).. (-21.30 = -22.94 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:58 2006