Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,948,817 – 26,948,937 |
Length | 120 |
Max. P | 0.500000 |
Location | 26,948,817 – 26,948,937 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.58 |
Mean single sequence MFE | -45.87 |
Consensus MFE | -36.00 |
Energy contribution | -34.80 |
Covariance contribution | -1.20 |
Combinations/Pair | 1.34 |
Mean z-score | -1.48 |
Structure conservation index | 0.78 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26948817 120 + 27905053 AUUGUUGGGCGAUCAUUCGCAGUUGGUUAACCAGCACGUUACCAUCCGCCGUGUUGCCCGUGGCGCAACAGGCAAUGUUCUCGUUCAACCACGAGAUUCUUGGCACAGGAAUACUGGUGU ...(((((((((.((((....(((((....)))))............(((.(((((((....).)))))))))))))...)))))))))(((.(((((((((...))))))).)).))). ( -43.60) >DroSec_CAF1 16483 120 + 1 AUUGUUGGGUGCUCAAUCGCAGUUGGGCAACCAGCACGUUACCAUCCGCCAUGUUGCCCGUGGCGCAACAGGCCAUGUCCUCGUUCAACGUCGAGAUUCUUGGCACGGGAAUACUGGUGU ..((((((.((((((((....)))))))).))))))...(((((...(((.(((((((....).)))))))))....(((.(((.....((((((...))))))))))))....))))). ( -44.80) >DroSim_CAF1 16538 120 + 1 AUUGUUGGCUGCUCAAUCGCAGUUGGGCAACCAGCACGUUACCAUCCGCCAUGUUGCCCGUGGCGCAACAGGCCAUGUCCUCGUUCAACGACGAGAUUCUUGGCACAGGAAUACUGGUGU ..((((((.((((((((....)))))))).))))))...((((((((((((((.....)))))).......((((.(..((((((....))))))...).))))...)))....))))). ( -46.80) >DroEre_CAF1 19158 120 + 1 AUUGUUGGGCGAUCAGGCGCAAUUCGGUGGUCAGCACGUUUCCAUCCGCCUUGUUGCCCGUGGCGCAACAGGCAGCGUCCUCGUUCAGCCUGCAGAUCCUGGGCGCAGGAAUGCUCGAGU ...(((((((((...(((((.....(((((...........))))).((((.((((((....).))))))))).))))).)))))))))..(((..(((((....))))).)))...... ( -47.70) >DroYak_CAF1 16983 120 + 1 AUUGCUGGGCGAUGAGUCGCAACUCGGUGGUCAGCACGUUUCCAUCCGCCGUGUUGCCCGUGGCGCAACACGCAUUGUCCUCGUUCAACCUGCAGAUCCUGGGCGCAGGAAUGCUGGAGU ...(((((((((((....(((((.((((((...............)))))).))))).((((......))))))))))))........((.(((..(((((....))))).))).))))) ( -46.46) >consensus AUUGUUGGGCGAUCAAUCGCAGUUGGGUAACCAGCACGUUACCAUCCGCCAUGUUGCCCGUGGCGCAACAGGCAAUGUCCUCGUUCAACCUCGAGAUUCUUGGCACAGGAAUACUGGUGU ..((((((.((((((((....)))))))).))))))...(((((((((((.(((((((....).)))))))))..((((.....((........)).....))))..)))....))))). (-36.00 = -34.80 + -1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:57 2006