| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,947,572 – 26,947,666 |
| Length | 94 |
| Max. P | 0.537469 |
| Location | 26,947,572 – 26,947,666 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.46 |
| Mean single sequence MFE | -29.59 |
| Consensus MFE | -17.80 |
| Energy contribution | -17.55 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537469 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26947572 94 + 27905053 -----------------GGGCCUUUGGCCACUUAGAGCUACUCGCCGG--AAAAUGUGCGAGUACGGUGUAUAAC-------UUUGACGUGAGCCAUAAAGGAAUUUAAAUAUUUCUCCA -----------------((.....(((((((((((((.((..(((((.--..............)))))..)).)-------))))).))).))))...((((((......)))))))). ( -25.86) >DroSec_CAF1 15234 94 + 1 -----------------GGGCCUUUGGCCACUUAGAGCUACUCGCCGG--AAAAUGCGAGAGUACGGUGUAUAAC-------UUUGACGUGAGCCAUAAAGGAAUUUAAAUAUUUCUCCA -----------------((.....(((((((((((((.((..(((((.--....(((....))))))))..)).)-------))))).))).))))...((((((......)))))))). ( -28.00) >DroSim_CAF1 15286 94 + 1 -----------------GGGCCUUUGGCCACUUAGAGCUACUCGCCGG--AAAAUGCGAGAGUACGGUGUAUAAC-------UUUGACGUGAGCCAUAAAGGAAUUUAAAUAUUUCUCCA -----------------((.....(((((((((((((.((..(((((.--....(((....))))))))..)).)-------))))).))).))))...((((((......)))))))). ( -28.00) >DroEre_CAF1 17843 96 + 1 ---------------GGGGGUCCUUGGCCACUUAGAGCUACUCGCCGG--GAAAUGUGAGAGCACGGUGUAUAAC-------UUUGACGUGAGCCAUAAAGGAAUUUAAAUAUUUCUCCA ---------------((((((((((((((((((((((.((..(((((.--....(((....))))))))..)).)-------))))).))).))))...))))...........))))). ( -31.60) >DroYak_CAF1 15729 111 + 1 UGGUGCGGGGGGGAAGGGGGCCUUUGGCCACUUAGAGCUACUCGCCGG--GAAAUGUGAGAGCACGGUGUAUAAC-------UUUGACGUGAGCCAUAAAGGAAUUUAAAUAUUUCUCCA ........((((((((((..(((((((((((((((((.((..(((((.--....(((....))))))))..)).)-------))))).))).))))..))))..))).....))))))). ( -35.20) >DroAna_CAF1 16154 109 + 1 UGGAAAGG---------GGG--UGAAGCCACUUAGGGUUUCUUUCCGAGAGAAAUAUGAGAACGCAGUGUAUAACUUGCUGCUUUGACGUGAGCCAUAAAGAAAUUUAAAUAUAUCUCUA ......((---------..(--.((((((......)))))))..)).(((((.((((......((((((.......))))))..((.(....).))((((....)))).)))).))))). ( -28.90) >consensus _________________GGGCCUUUGGCCACUUAGAGCUACUCGCCGG__AAAAUGUGAGAGCACGGUGUAUAAC_______UUUGACGUGAGCCAUAAAGGAAUUUAAAUAUUUCUCCA .................((.....(((((((((((((((.(((((..........))))))))...((.....)).......))))).))).))))...((((((......)))))))). (-17.80 = -17.55 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:51 2006