Locus 10053

Sequence ID 3R_DroMel_CAF1
Location 26,936,910 – 26,937,008
Length 98
Max. P 0.679859
window16012

overview

Window 2

Location 26,936,910 – 26,937,008
Length 98
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 89.55
Mean single sequence MFE -25.15
Consensus MFE -20.92
Energy contribution -20.70
Covariance contribution -0.22
Combinations/Pair 1.12
Mean z-score -1.93
Structure conservation index 0.83
SVM decision value 0.30
SVM RNA-class probability 0.679859
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26936910 98 + 27905053
UUCAUCCUUCCAACCUUUU-GGGCCAUGUCAAUUGCAGCCAGAAGAAAUUCAUUUUGGCUUGCGGGCAAAGUUAAAUUGAAUUUUUUCACCAGAACUCG
...............((((-((((.((....)).)).....(((((((((((.((((((((.......)))))))).))))))))))).)))))).... ( -24.90)
>DroPse_CAF1 13047 93 + 1
C-CACGU---CG-CCGUUC-UGGCCAUGUCAAUUGCAGCCAGAAGAAAUUCAUUUUGGCUUGCGGGCAAAGUUAAAUUGAAUUUUUUCCCCAGAACUCG
.-.....---..-..((((-(((...(((.....)))....(((((((((((.((((((((.......)))))))).))))))))))).)))))))... ( -27.80)
>DroSec_CAF1 4611 98 + 1
UUCAUCCUUCCAACAUUUU-GGGCCAUGUCAAUUGCAGCCAAGAGAAAUUCAUUUUGGCUUGCGGGCAAAGUUAAAUUGAAUUUUUUCACCAGAACUCG
...............((((-(((((........(((((((((((........))))))).)))))))..........((((....)))))))))).... ( -22.30)
>DroEre_CAF1 7031 99 + 1
UUCAUCCCUCCAACAUUUUGGGGCCAUGUCAAUUGCAGUCAGAAGAAAUUCAUUUUGGCUUGCGGGCAAAGUUAAAUUGAAUUUUUUUACCAGAACUCG
...............(((((((((..(((.....)))))).(((((((((((.((((((((.......)))))))).))))))))))).)))))).... ( -23.10)
>DroYak_CAF1 4942 99 + 1
UUCAUGCUUCCAACAUUUUUGGGCCAUGUCAAUUGCAGCCAGAAGAAAUUCAUUUUGGCUUGCGGGCAAAGUUAAAUUGAAUUUUUUCACCAGAACUCG
................((((((((.((....)).)).....(((((((((((.((((((((.......)))))))).))))))))))).)))))).... ( -25.00)
>DroPer_CAF1 13060 93 + 1
C-CACGU---CG-CCGUUC-UGGCCAUGUCAAUUGCAGCCAGAAGAAAUUCAUUUUGGCUUGCGGGCAAAGUUAAAUUGAAUUUUUUCCCCAGAACUCG
.-.....---..-..((((-(((...(((.....)))....(((((((((((.((((((((.......)))))))).))))))))))).)))))))... ( -27.80)
>consensus
UUCAUCCUUCCAACAUUUU_GGGCCAUGUCAAUUGCAGCCAGAAGAAAUUCAUUUUGGCUUGCGGGCAAAGUUAAAUUGAAUUUUUUCACCAGAACUCG
.....................(((..(((.....)))))).(((((((((((.((((((((.......)))))))).)))))))))))........... (-20.92 = -20.70 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:49 2006