Locus 10052

Sequence ID 3R_DroMel_CAF1
Location 26,936,085 – 26,936,176
Length 91
Max. P 0.945579
window16011

overview

Window 1

Location 26,936,085 – 26,936,176
Length 91
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 71.56
Mean single sequence MFE -20.70
Consensus MFE -10.86
Energy contribution -11.70
Covariance contribution 0.84
Combinations/Pair 1.25
Mean z-score -1.95
Structure conservation index 0.52
SVM decision value 1.35
SVM RNA-class probability 0.945579
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26936085 91 + 27905053
CUCUUCAACAAAGCCAAAGCAA------GUAUUUGUCCAAG-------UGUGGUGGGCCAUGAUAUUUGGAUUGUCCUAUUCCUAA----UUUAUGUCCCACCGAAAA
(.(((..(((((..(.......------)..)))))..)))-------.)(((((((.(((((.(((.(((.........))).))----)))))).))))))).... ( -22.20)
>DroSec_CAF1 3794 91 + 1
CUCUUCAACAAAGCCAAAGCAA------GUAUUUGGCCAAG-------UGUGGUGGGCCAUGAUAUUUGGAUUGUCCUAUUCCUAA----UUUAUGUCCCACCGAAAA
...(((.(((..((((((....------...))))))....-------)))((((((.(((((.(((.(((.........))).))----)))))).))))))))).. ( -28.50)
>DroSim_CAF1 3763 91 + 1
CUCUUCAACAAAGCCAAAGCAA------GUAUUUGGCCAAG-------UGUGGUGGGCCAUGAUAUUUGGAUUGUCCUAUUCCUAA----UUUAUGUCCCACCGAAAA
...(((.(((..((((((....------...))))))....-------)))((((((.(((((.(((.(((.........))).))----)))))).))))))))).. ( -28.50)
>DroEre_CAF1 6238 88 + 1
---UCCUACAAAGCCAAAG------CCAAAUAUUGUCCAAG-------UGUGGUGGGUCAUGAUAUUUGGACCGUCCUAUUCCUAA----UUUAUAUCCCACCCAAAA
---................------................-------((.((((((..((((.(((.(((.........))).))----)))))..))))))))... ( -16.10)
>DroYak_CAF1 3807 89 + 1
CUUUUCUACAAAGCCAAAGCCAUAGCCAAAUAUUGUCCAAG---------------GCCAUGAUAUUUGGAUUGUCCUAUUCCUAA----UUUAUAUCCCACCCAAAA
.......((((..(((((..(((.(((.............)---------------)).)))...))))).))))...........----.................. ( -11.42)
>DroPer_CAF1 12153 90 + 1
------------ACCAAAUGAA------AUAUUGGACUUCUUUCACUCGGUGCCUGUCUAUGAUAUUAGGAUUGCGCAAUUCCUGAGCUUCUUAUGUCCAAGCGAAAA
------------..........------...((((((........(((((((((..((((......))))...).)))....)))))........))))))....... ( -17.49)
>consensus
CUCUUCAACAAAGCCAAAGCAA______AUAUUUGUCCAAG_______UGUGGUGGGCCAUGAUAUUUGGAUUGUCCUAUUCCUAA____UUUAUGUCCCACCGAAAA
...................................................((((((.(((((..((.(((.........))).)).....))))).))))))..... (-10.86 = -11.70 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:49 2006