Locus 10051

Sequence ID 3R_DroMel_CAF1
Location 26,933,708 – 26,933,828
Length 120
Max. P 0.529117
window16010

overview

Window 0

Location 26,933,708 – 26,933,828
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.83
Mean single sequence MFE -43.17
Consensus MFE -30.00
Energy contribution -30.50
Covariance contribution 0.50
Combinations/Pair 1.25
Mean z-score -1.89
Structure conservation index 0.69
SVM decision value -0.01
SVM RNA-class probability 0.529117
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26933708 120 - 27905053
CCGCCAGUGGCUUCUGGUACCGCUUCAUUCGAUUCUCCGAAGACUUGGCUAAGGUCAAGGAGGAAUCUAAUCUGGAGACAGCUGCAUUUUUGCCGGAGAAUCUCUGGCGGCAAGUGAAAA
(((((((.((.((((((((..((.......((((((((...(((((.....)))))..))).)))))....(((....)))..)).....))))))))..)).))))))).......... ( -42.60)
>DroSec_CAF1 1377 120 - 1
CCGCUAGUGGCUCCUGGUACCGCUUUAUCCGAUUCUCCGAAGACUUGGCUAAGGUCAAGCAGGAAUCCAAUCUGGAGACAGCUACAUUUUUGCCGGAGAAUCUCUGGCGGCAAGUGAAUA
((((((((((.........)))).......(((((((((..(((((.....)))))..((((((((.....(((....)))....)))))))))))))))))..)))))).......... ( -43.30)
>DroSim_CAF1 1384 120 - 1
CCGCCAGUGGGUUCUGGUACCGCUUCAUCCGAUUCUCCGAAGACGUGGCUAAAGUCAAGGAGGAAUCCAAUCUGGAGACAGCUACAUUUUUGCCGGAGAAUCUCUGGCGGCAAGUGAAUA
(((((((.((((...((.....))..))))(((((((((((((.((((((........(((....))).....(....))))))).))))...))))))))).))))))).......... ( -44.50)
>DroEre_CAF1 1518 120 - 1
CCGCCAGUGGCUUCUGGUACCGCUUCAUCCGGUACUCAGAUGACUUGGCUAAGGUGAAGGAGGAAUCCAAUCUGGAGACAGCUGCCUUUCUGCCGGAGAACCUCUGGCGGCAAGUGAAUA
(((((((.((..((((((((((.......)))))).))))...((((((.(((((...(((....)))...(((....)))..)))))...))).)))..)).))))))).......... ( -49.00)
>DroYak_CAF1 1382 120 - 1
CCGCCAGUGGCUACUGGUACCGCUUCAUCCGGUACACCGAGGACUUGGCCAAGGUGAAGGAGGAAGCCCAUCUGGAGACAGCUGCCUUUCUGCCGGAGAAUCUCUGGCGGCAAGUGAAUG
..((((((....))))))...(((((.(((....((((..((......))..))))..))).))))).((.(((....))).)).(((.(((((((((...))))))))).)))...... ( -47.40)
>DroAna_CAF1 1415 120 - 1
GCGCCAGUGGCUUCUGGUACCGGUUCCUACGCUCCACCGAUAACUUGGCCACAAUCAAGGCAGAGUCUCACCUGGAAACGGCUGCAUUUCUACCCCACAACCUCUGGCAGGCUCUUAAGA
..((((((((((...(((..((((...........))))...))).))))))......((.((((...((.(((....))).))...)))).))..........))))............ ( -32.20)
>consensus
CCGCCAGUGGCUUCUGGUACCGCUUCAUCCGAUUCUCCGAAGACUUGGCUAAGGUCAAGGAGGAAUCCAAUCUGGAGACAGCUGCAUUUCUGCCGGAGAAUCUCUGGCGGCAAGUGAAUA
(((((((.((..((((((.........................((((((....))))))..((((......(((....)))......))))))))))...)).))))))).......... (-30.00 = -30.50 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:48 2006