| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,929,535 – 26,929,638 |
| Length | 103 |
| Max. P | 0.599970 |
| Location | 26,929,535 – 26,929,638 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 79.11 |
| Mean single sequence MFE | -27.59 |
| Consensus MFE | -12.79 |
| Energy contribution | -13.10 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599970 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26929535 103 + 27905053 GAAUGCCAC--ACAUGCGGUAAG---UCGCGUGUU---UUGUUGUGGCAAAA-UGCUCUUGACAAAUUUCCGCACAUCAAACACAUUUGUUAUGAGCGUUUUGCACAACUUU------ .........--((((((((....---)))))))).---..((((((.(((((-(((((.((((((((.................)))))))).))))))))))))))))...------ ( -36.33) >DroPse_CAF1 6893 98 + 1 ACA---UAC--ACAAGCGGCGAUGUUUCUUCUG------UUUUGUGCGA-AA-UGUUUUUGACAAAUUUCCGCACAUCAAACGAAUCUGUUAUGAGCGUUUU-CACAAUUUU------ ...---...--..((((((.((....))..)))------)))((((.((-((-(((((.(((((.((((.............)))).))))).)))))))))-)))).....------ ( -17.82) >DroSim_CAF1 4386 102 + 1 GAAUGCCAC--ACAUGCGGCAAG---UCGCGUGUU---UUGUUGUGGCA-AA-UGCUCUUGACAAAUUUCCGCACAUCUAACACAUUUGUUAUGAGCGUUUUGCACAACUUU------ .........--((((((((....---)))))))).---..((((((.((-((-(((((.((((((((.................)))))))).))))).))))))))))...------ ( -32.73) >DroYak_CAF1 4613 104 + 1 GCAUGCCACACACAUGUGGUAAG---UCGCGUGUU---UUGUUGUGGCA-AA-UGCUCUUGACAAAUUUCCGCACAUCUAACACAUUUGUUAUGAGCGUUUUGCACAACUUU------ (((((((((((((((((((....---)))))))).---..).)))))))-((-(((((.((((((((.................)))))))).))))))).)))........------ ( -33.63) >DroAna_CAF1 4690 111 + 1 AUGUGCCAC--ACAUGCGGCAAG---UCACAUGUUUGUUUGUUGUGGCA-AACUGCUUUUGACAAAUUUCCGCACAUCUAACAAAUUUGUUAUGAGAGUUUU-CACAAUUUCGGGAGU .....((..--(((((.((....---)).)))))..(...(((((((.(-((((.(((.((((((((((.............)))))))))).)))))))))-))))))..))).... ( -26.22) >DroPer_CAF1 6848 98 + 1 ACA---UAC--ACAAGCGGCGAGGUUUCUUCUG------UUUUGUGCGA-AA-UGUUUUUGACAAAUUUCCGCACAUCAAACGAAUCUGUUAUGAGCGUUUU-CACAAUUUU------ ...---...--..((((((.(((....))))))------)))((((.((-((-(((((.(((((.((((.............)))).))))).)))))))))-)))).....------ ( -18.82) >consensus ACAUGCCAC__ACAUGCGGCAAG___UCGCGUGUU___UUGUUGUGGCA_AA_UGCUCUUGACAAAUUUCCGCACAUCAAACAAAUUUGUUAUGAGCGUUUU_CACAACUUU______ ............((((.((.......)).)))).......((((((.......(((((.((((((((.................)))))))).))))).....))))))......... (-12.79 = -13.10 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:47 2006