Locus 10048

Sequence ID	3R_DroMel_CAF1
Location	26,924,273 – 26,924,363
Length	90
Max. P	0.982409

overview

Window 3

Location	26,924,273 – 26,924,363
Length	90
Sequences	3
Columns	90
Reading direction	forward
Mean pairwise identity	99.26
Mean single sequence MFE	-16.27
Consensus MFE	-15.23
Energy contribution	-15.23
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.68
Structure conservation index	0.94
SVM decision value	0.14
SVM RNA-class probability	0.604048
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26924273 90 + 27905053
AUUAAAAGCUCAUGCAUAAGGCAUGCCCCAUGUCCCUGCAGCAAAAACAGCAAGGACCCUGGACCAGAAAUAAUAACCGCAACAAAGCAU
.......((((((((.....)))))..(((.((((.(((..........))).))))..))).......................))).. ( -18.80)
>DroSec_CAF1 26993 90 + 1
AUUAAAAGCUCAUGCAUAAGGCAUGCCCCAUGUCCCUGCAGCAAAAACAACAAGGACCCUGGACCAGAAAUAAUAACCGCAACAAAGCAU
.......((((((((.....)))))..(((.((((.((..(......)..)).))))..))).......................))).. ( -15.00)
>DroSim_CAF1 26187 90 + 1
AUUAAAAGCUCAUGCAUAAGGCAUGCCCCAUGUCCCUGCAGCAAAAACAACAAGGACCCUGGACCAGAAAUAAUAACCGCAACAAAGCAU
.......((((((((.....)))))..(((.((((.((..(......)..)).))))..))).......................))).. ( -15.00)
>consensus
AUUAAAAGCUCAUGCAUAAGGCAUGCCCCAUGUCCCUGCAGCAAAAACAACAAGGACCCUGGACCAGAAAUAAUAACCGCAACAAAGCAU
.......((((((((.....)))))..(((.((((.((............)).))))..))).......................))).. (-15.23 = -15.23 +  -0.00)

alignment

secondary structure

dotplot

Window 4

Location	26,924,273 – 26,924,363
Length	90
Sequences	3
Columns	90
Reading direction	reverse
Mean pairwise identity	99.26
Mean single sequence MFE	-28.15
Consensus MFE	-28.37
Energy contribution	-28.15
Covariance contribution	-0.22
Combinations/Pair	1.04
Mean z-score	-2.63
Structure conservation index	1.01
SVM decision value	1.91
SVM RNA-class probability	0.982409
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26924273 90 - 27905053
AUGCUUUGUUGCGGUUAUUAUUUCUGGUCCAGGGUCCUUGCUGUUUUUGCUGCAGGGACAUGGGGCAUGCCUUAUGCAUGAGCUUUUAAU
..((((...((((((...........((((...((((((((.((....)).))))))))...))))..)))....))).))))....... ( -29.22)
>DroSec_CAF1 26993 90 - 1
AUGCUUUGUUGCGGUUAUUAUUUCUGGUCCAGGGUCCUUGUUGUUUUUGCUGCAGGGACAUGGGGCAUGCCUUAUGCAUGAGCUUUUAAU
..((((...((((((...........((((...((((((((.((....)).))))))))...))))..)))....))).))))....... ( -27.62)
>DroSim_CAF1 26187 90 - 1
AUGCUUUGUUGCGGUUAUUAUUUCUGGUCCAGGGUCCUUGUUGUUUUUGCUGCAGGGACAUGGGGCAUGCCUUAUGCAUGAGCUUUUAAU
..((((...((((((...........((((...((((((((.((....)).))))))))...))))..)))....))).))))....... ( -27.62)
>consensus
AUGCUUUGUUGCGGUUAUUAUUUCUGGUCCAGGGUCCUUGUUGUUUUUGCUGCAGGGACAUGGGGCAUGCCUUAUGCAUGAGCUUUUAAU
..((((...((((((...........((((...((((((((.((....)).))))))))...))))..)))....))).))))....... (-28.37 = -28.15 +  -0.22)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:42 2006