Locus 10044

Sequence ID 3R_DroMel_CAF1
Location 26,908,468 – 26,908,558
Length 90
Max. P 0.623245
window15996

overview

Window 6

Location 26,908,468 – 26,908,558
Length 90
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 81.04
Mean single sequence MFE -20.33
Consensus MFE -13.24
Energy contribution -13.47
Covariance contribution 0.22
Combinations/Pair 1.07
Mean z-score -1.60
Structure conservation index 0.65
SVM decision value 0.18
SVM RNA-class probability 0.623245
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26908468 90 + 27905053
GGAAAUUGACCAGUAUUUCAUGGAUCAAAUGCUGCCCAUGACGCAGCACCACCAUCCGCAUCACACCCACC---------CGCUGCACCACCCA------------CUGCA
(((..(((((((........))).)))).((((((.......))))))......)))..............---------....(((.......------------.))). ( -18.90)
>DroSec_CAF1 9631 90 + 1
GGAAAUUGACCAGUAUUUCAUGGAUCAAAUGCUGCCCAUGACGCAGCACCACCAUCCGCACCACACGCACC---------CGCUGCACCACCCA------------CUGCA
(((..(((((((........))).)))).((((((.......))))))......)))((.......))...---------....(((.......------------.))). ( -19.90)
>DroSim_CAF1 10417 90 + 1
GGAAAUUGACCAGUAUUUCAUGGAUCAAAUGCUGCCCAUGACGCAGCACCACCAUCCGCACCACACGCACC---------CGCUGCACCACCCA------------CUGCA
(((..(((((((........))).)))).((((((.......))))))......)))((.......))...---------....(((.......------------.))). ( -19.90)
>DroEre_CAF1 9675 102 + 1
GGAAAUUGACCAGUAUCUCAUGGAUCAAAUGCUGCCCAUGGCGCAGCACCACCAUCCGCACCACACGCACC---------CGCUGCACCACCCGCUGCAGCACCCACUGCA
(((..(((((((........))).)))).(((((((....).))))))......)))((.......))...---------.((((((.(....).)))))).......... ( -29.80)
>DroYak_CAF1 10076 111 + 1
GGAAAUUGACCAGUAUCUCAUGGAUCAAAUGUUGCCCAUGACGCAGCACCAUCAUUCGCAUCACCCACACCACACGCACCCGCUGCACCACCCACUGCACCACCCGCUGCA
((...(((((((........))).)))).((((((.......)))))))).......(((.(.............((....))((((........))))......).))). ( -20.20)
>DroAna_CAF1 16171 84 + 1
GGAAAUUGACCAGUAUCUCAUGGAUCAAAUGCUACCCAUGACGCAUCACCA------GCACCACCCCCAUC---------AUCACCAGCAGUCG------------CUGCA
((...(((((((........))).)))).((((.....(((....)))..)------))))).........---------.....((((....)------------))).. ( -13.30)
>consensus
GGAAAUUGACCAGUAUCUCAUGGAUCAAAUGCUGCCCAUGACGCAGCACCACCAUCCGCACCACACGCACC_________CGCUGCACCACCCA____________CUGCA
((...(((((((........))).)))).((((((.......))))))))............................................................. (-13.24 = -13.47 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:36 2006