Locus 10043

Sequence ID 3R_DroMel_CAF1
Location 26,899,829 – 26,899,941
Length 112
Max. P 0.854131
window15995

overview

Window 5

Location 26,899,829 – 26,899,941
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.49
Mean single sequence MFE -38.54
Consensus MFE -25.96
Energy contribution -27.76
Covariance contribution 1.80
Combinations/Pair 1.00
Mean z-score -3.22
Structure conservation index 0.67
SVM decision value 0.80
SVM RNA-class probability 0.854131
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26899829 112 + 27905053
ACAAUAUAUGAAAACGACGCCGCUGUGUCGCAGAUCGACUUUUGGCCUAACAGA----UU---UGCAUUAAUCAUGAAAGAGGCGAUCUGCGGCAGAUAGCUUUUAAGAAUAGUGG-AAU
...................(((((((((((((((((..(....)((((..((((----((---......)))).))....))))))))))))))......((....)).)))))))-... ( -32.30)
>DroSec_CAF1 8552 112 + 1
ACAAUAUAUGGAAACGACGCCGCUGUGUCGCAGAUCGCCUUUUGGCCCGACAGA----UU---UCCAUUAAUCAUGAAAGAGGCGAUCUGCGGCAGAUAGCUUUUAAGAAUAGUGG-AAU
........((....))...(((((((((((((((((((((((((......).((----((---......))))....)))))))))))))))))......((....)).)))))))-... ( -40.70)
>DroSim_CAF1 9344 116 + 1
ACAAUAUAUGAAAACGACGCCGCUGUGUCGCAGAUCGCCUUUUGGCCUGACAGACAGGCC---UGCAUUAAUCAUGAAAGAGGCGAUCUGCGGCAGAUAGCUUUUAAGAAUAGUGG-AAU
...................((((((((((((((((((((((((((((((.....))))))---..(((.....))).)))))))))))))))))......((....)).)))))))-... ( -48.40)
>DroEre_CAF1 8621 109 + 1
ACAAUAUAUGAAAUCGACGCCGCUGUGUCGCAGAUCGCCUUUUGGCCUGACGGA----UU---UGCAUUAAUCACGA-AGCGGAGAUCUGCGGCAGAUAGCUUUUAAGAAUAGUGU---A
....(((((....((......((((((((((((((((((....)))(((.((((----((---......)))).)).-..))).)))))))))))..))))......))...))))---) ( -33.90)
>DroYak_CAF1 9031 115 + 1
ACAAUAUAUGCAAACGACGCCGCUGUGUCGCAGAUCGCCUUUUGGCCCGACAGA----UUUUAUGCAUUAAUCACGC-AGCUGAGAUCUGCGGCAGAUAGCUUUUAAGAAUAGUGGCAAU
..................(((((((((((((((((((((....)))....(((.----.....(((.........))-).))).))))))))))......((....)).))))))))... ( -37.40)
>consensus
ACAAUAUAUGAAAACGACGCCGCUGUGUCGCAGAUCGCCUUUUGGCCUGACAGA____UU___UGCAUUAAUCAUGAAAGAGGCGAUCUGCGGCAGAUAGCUUUUAAGAAUAGUGG_AAU
...................((((((((((((((((((((((((..................................)))))))))))))))))......((....)).))))))).... (-25.96 = -27.76 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:35 2006