| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,888,279 – 26,888,399 |
| Length | 120 |
| Max. P | 0.796139 |
| Location | 26,888,279 – 26,888,399 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.67 |
| Mean single sequence MFE | -32.60 |
| Consensus MFE | -26.12 |
| Energy contribution | -26.12 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.796139 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26888279 120 - 27905053 UUUAUUGCUUCGCACCUACAUAUUUGGUUUACUUUUUUCGUUAUUUAUUUGUUGGUAGUUGACCAUCGGUCGAAAUAACGACGAUUUUCAUUCGUCGGCGAUCGCACGUCUUUGCGUGUG .........(((((((.........)))...........(((((((..(((.((((.....)))).)))...)))))))(((((.......))))).)))).(((((((....))))))) ( -31.30) >DroSec_CAF1 96511 120 - 1 UUUAUUGCUUCGCACCUACAUAUUUGGUUUACGUUUUUCGUUAUUUAUUUGUUGGAGGUUGACCAUCGGUCGAAAUAACGACGGUUUUCAUUCGUCGGCGAUCGCACGUCUAUGCGUGUG .........((((.(((..(((..(((...(((.....)))...)))..)))...)))((((((...)))))).....((((((.......)))))))))).(((((((....))))))) ( -31.80) >DroSim_CAF1 100153 120 - 1 UUUAUUGCUUCGCACCUACAUAUUUGGUUUACGGUUUUCGUUAUUUAUUUGUUGGUGGUUGACCAUCGGUCGAAAUAACGACGGUUUUCAUUCGUCGGCGAUCGCACGUCUUUGCGUGUG ...(((((((((.(((...(((..(((...(((.....)))...)))..))).(((((....))))))))))))....((((((.......)))))))))))(((((((....))))))) ( -33.90) >DroEre_CAF1 105214 120 - 1 UUUACUGCUUCGCACCUACAUACUGGGUUUACUUUUUUCGUUAUUUGUUUGUUGGUGGUUGACCAUCGGUCGAAGUAACGACGAUUUUCAUUCGUCGGCGAUCGCAGGUCUUUGGAUGUG ....((((.(((((((((.....)))))...........(((((...(((((((((((....))))))).)))))))))(((((.......))))).))))..))))(((....)))... ( -34.50) >DroYak_CAF1 111453 119 - 1 UUUACUGCUUCGCACCUACAAAUGGGGCUUACUUUUUUCGUU-UUUGUUCGUUGGCAGUUGACCAUCGGUCGAAAUAACGACGAUUUUCAUUCGUCGGCGAUCGCGAGUCUUUGCAUGUG ..((((((...((.((((....))))))........(((((.-.(((((.((((....((((((...))))))..))))(((((.......))))))))))..))))).....))).))) ( -31.50) >consensus UUUAUUGCUUCGCACCUACAUAUUUGGUUUACUUUUUUCGUUAUUUAUUUGUUGGUGGUUGACCAUCGGUCGAAAUAACGACGAUUUUCAUUCGUCGGCGAUCGCACGUCUUUGCGUGUG .........((((.((.(((.((..(....((.......))..)..)).))).))...((((((...)))))).....((((((.......)))))))))).(((((((....))))))) (-26.12 = -26.12 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:32 2006