Locus 10040

Sequence ID 3R_DroMel_CAF1
Location 26,888,015 – 26,888,126
Length 111
Max. P 0.713567
window15991

overview

Window 1

Location 26,888,015 – 26,888,126
Length 111
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 74.46
Mean single sequence MFE -20.04
Consensus MFE -7.61
Energy contribution -9.24
Covariance contribution 1.63
Combinations/Pair 1.09
Mean z-score -1.85
Structure conservation index 0.38
SVM decision value 0.38
SVM RNA-class probability 0.713567
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26888015 111 + 27905053
ACGAUUUU-AAUUUUCCAUUGCUG-UAUUUAUAUACAUUAGCCAGAAUGCAUUUUUUUUAUGCAACUAUAGAAAUCUCCAUUUUCAAUUUAUUGGUGA-AUCGUUCAAGAUCUU
(((((((.-.............((-(((....)))))...(((((..(((((.......)))))......((((.......))))......)))))))-))))).......... ( -17.70)
>DroSec_CAF1 96247 111 + 1
ACGAUUUU-UGUUUUCCACUGCUGCUAUUUAGAUGCAUUAGCUUAAUUGCAUUUU-UGUAUGCAACUAUAGAAAUCUCCAUUUUCUAUUUAGUGGUGG-AUCGUUCAAGAUCUU
..((((((-.....(((((..(((((((..(((((((..........))))))).-.))).))....(((((((.......)))))))..))..))))-)......)))))).. ( -30.20)
>DroSim_CAF1 99941 110 + 1
ACUAUUUU-UGUU-UCCACUGCUGCUAUUUAGAUGCAUUAGCUUAAUUGCAUUUU-UGUAUGCAACUAUAGAAAUCUCCAUUUUCUAUUUAUUGGUGG-AUCGUUCAAGAUCUU
.....(((-((..-((((((..((((((..(((((((..........))))))).-.))).)))...(((((((.......))))))).....)))))-).....))))).... ( -24.80)
>DroEre_CAF1 104973 91 + 1
ACGAUUUUCUGUAUCCCAUUGCCGU---------ACAAAAGCUUAAUUG-------------CAUCUGCAGAAAUCUCCAUUUUCUAUUUAUUGGUGG-AUCGUUCAAGAUCUG
..(((((.(((((.....(((....---------.)))..((......)-------------)...)))))))))).(((............))).((-(((......))))). ( -15.40)
>DroYak_CAF1 111223 98 + 1
ACGAUAUUUUAUUUCCCACUGCUCC-------------CAGCUUAAUUGCACUUU-UGCAUGCAUCUACCGAAAUCUCCAUUUUCCAUUUAUUGCUGGAAUCGCUGAAGAUC--
....................((..(-------------((((.....((((....-))))..........((((.......))))........)))))....))........-- ( -12.10)
>consensus
ACGAUUUU_UGUUUUCCACUGCUGCUAUUUA_AUACAUUAGCUUAAUUGCAUUUU_UGUAUGCAACUAUAGAAAUCUCCAUUUUCUAUUUAUUGGUGG_AUCGUUCAAGAUCUU
..((((((.......(((((...........................(((((.......)))))...(((((((.......))))))).....)))))........)))))).. ( -7.61 =  -9.24 +   1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:31 2006