Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,193,321 – 3,193,481 |
Length | 160 |
Max. P | 0.951943 |
Location | 3,193,321 – 3,193,441 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -27.17 |
Consensus MFE | -27.20 |
Energy contribution | -26.43 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.18 |
Mean z-score | -1.98 |
Structure conservation index | 1.00 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.951943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3193321 120 - 27905053 UCACCGAAAACUAAUAUUCGUCAAUCGGGAGUAUGAUCUAUUUUAUAUUCGUCAAAUGGCAGCCCCCUGUCCUCAUAAGUGCGAGUGUUGUUAUAGCCGCGAUUCACUUAUUUUAAAAAU ...((((..((........))...))))((((((((......)))))))).......(((((....)))))...(((((((....(((.((....)).)))...)))))))......... ( -22.40) >DroSec_CAF1 12830 120 - 1 ACAUCAAAAACUAAUACUCGUCAAUCAGGAGUAUGAUCUAUUUUAUAUUCGUGAAAUGGCAGCCCCCUGCCCUCAUAAAUGCGAGUGUUGUUACAGCCGCGAUUCACUUAUUUUUAAAAU ........(((.(((((((((...(((.((((((((......)))))))).)))...(((((....))))).........))))))))))))............................ ( -29.70) >DroSim_CAF1 19557 120 - 1 UCACCAAAAACUGAUACUCGUCAAUCAGGAAUAUGAUCUAUUUUAUAUUCGUGAAAUGGCAGCCCCCUGCCCUCAUAAAUGCGAGUGUUGUUACAGCCGCGAUUCACUUAUUUUAAAAAU ........(((.(((((((((...(((.((((((((......)))))))).)))...(((((....))))).........))))))))))))............................ ( -29.40) >consensus UCACCAAAAACUAAUACUCGUCAAUCAGGAGUAUGAUCUAUUUUAUAUUCGUGAAAUGGCAGCCCCCUGCCCUCAUAAAUGCGAGUGUUGUUACAGCCGCGAUUCACUUAUUUUAAAAAU ........(((.(((((((((...(((.((((((((......)))))))).)))...(((((....))))).........))))))))))))............................ (-27.20 = -26.43 + -0.77)
Location | 3,193,361 – 3,193,481 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -24.80 |
Energy contribution | -24.25 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.12 |
Mean z-score | -3.18 |
Structure conservation index | 0.83 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3193361 120 - 27905053 UUAAUACAAUUAUGAGCAUCUAUAAGUAUAUGGAAUGGCUUCACCGAAAACUAAUAUUCGUCAAUCGGGAGUAUGAUCUAUUUUAUAUUCGUCAAAUGGCAGCCCCCUGUCCUCAUAAGU .........(((((((..((((((....)))))).((((....((((..((........))...))))((((((((......))))))))))))...(((((....)))))))))))).. ( -27.80) >DroSec_CAF1 12870 120 - 1 UUACUACGAUUAUGAGCAUCUAUAAGAAUAUGGAAUGGCUACAUCAAAAACUAAUACUCGUCAAUCAGGAGUAUGAUCUAUUUUAUAUUCGUGAAAUGGCAGCCCCCUGCCCUCAUAAAU .........(((((((.........(((((((((((((....((((........(((((.(.....).)))))))))))))))))))))).......(((((....)))))))))))).. ( -29.30) >DroSim_CAF1 19597 120 - 1 UAACUACAAUUAUGAGCAUUUAUAAGAAUAUGGAAUGGCUUCACCAAAAACUGAUACUCGUCAAUCAGGAAUAUGAUCUAUUUUAUAUUCGUGAAAUGGCAGCCCCCUGCCCUCAUAAAU .........(((((((.((((....(((((((((((((..(((.......(((((........))))).....))).)))))))))))))...))))(((((....)))))))))))).. ( -32.00) >consensus UUACUACAAUUAUGAGCAUCUAUAAGAAUAUGGAAUGGCUUCACCAAAAACUAAUACUCGUCAAUCAGGAGUAUGAUCUAUUUUAUAUUCGUGAAAUGGCAGCCCCCUGCCCUCAUAAAU .........(((((((..((((((....)))))).((((....................)))).(((.((((((((......)))))))).)))...(((((....)))))))))))).. (-24.80 = -24.25 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:07 2006