Locus 10039

Sequence ID 3R_DroMel_CAF1
Location 26,887,583 – 26,887,702
Length 119
Max. P 0.981158
window15990

overview

Window 0

Location 26,887,583 – 26,887,702
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.82
Mean single sequence MFE -27.82
Consensus MFE -23.68
Energy contribution -23.28
Covariance contribution -0.40
Combinations/Pair 1.06
Mean z-score -2.00
Structure conservation index 0.85
SVM decision value 1.88
SVM RNA-class probability 0.981158
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26887583 119 - 27905053
UUCACACGUGUUUUGCUUUAUUCGUAUUGCUGCAAUAAAAGUAUACGUUUCAGGUAUUUCGAUACAUCUGUGUAACAUCAAAAUUGGCAUGCUACCUAUAACUGCAAGACAUGCCAAUG-
..((((.((((..(((((.(..(((((.(((........))))))))..).))))).......)))).))))..........(((((((((((.............)).))))))))).- ( -27.32)
>DroSec_CAF1 95821 119 - 1
UUCACACGUGUUUUGCUUUAUUCGUAUUGCUGCAAUAAAAGUAUUCGUUUCAGGUAUUUCGAUACCUCGGCGUAACAUCAAAAUUGGCAUGCUACCUAUAACUGCAAAACAUGCCAAUA-
......((((((((((..((((..(((((...)))))..))))...(((..(((((...(((....)))((((..((.......))..)))))))))..))).))))))))))......- ( -27.70)
>DroSim_CAF1 99513 119 - 1
UUCACACGUGUUUUGCUUUAUUCGUAUUGCUGCAAUAAAAGUAUUCGUUUCAGGUAUUUCGAUGCCUCGGCGUAACAUCAAAAUUGGCAUGCUACCUAUAACUGCAAAACAUGCCAAUA-
......((((((((((..((((..(((((...)))))..))))...(((..(((((...(((....)))((((..((.......))..)))))))))..))).))))))))))......- ( -27.70)
>DroEre_CAF1 104531 120 - 1
UUCACACGUGUUUUGCUUUAUUAGUAUUGCAGCAAUAAAAGUAUUCGUUUCAGGUAUUUCGAUGCCUCGGUGUAACAUCAAAAUUGGCAUGCUACCUAUAACUGCAAAACAUGCCAAUGA
......((((((((((..((((..(((((...)))))..))))...(((..(((((...(.(((((....((......)).....)))))).)))))..))).))))))))))....... ( -27.40)
>DroYak_CAF1 110770 120 - 1
UUCACACGUGUUUUGCUUUAUUAGUAUUGCAGCAAUAAAAGUAUUCGUUUCAGGUAUUUCGCUGCCUCUGUGUAACAUCAAAAUUGGCAUGCUACCUAUAACUGCAAAACAUGCCAAGGA
......((((((((((..((((..(((((...)))))..))))...(((..(((((....((((((....((......)).....)))).)))))))..))).))))))))))....... ( -29.00)
>consensus
UUCACACGUGUUUUGCUUUAUUCGUAUUGCUGCAAUAAAAGUAUUCGUUUCAGGUAUUUCGAUGCCUCGGUGUAACAUCAAAAUUGGCAUGCUACCUAUAACUGCAAAACAUGCCAAUG_
......((((((((((..((((..(((((...)))))..))))...(((..(((((....(......).((((..((.......))..)))))))))..))).))))))))))....... (-23.68 = -23.28 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:30 2006