Locus 10036

Sequence ID 3R_DroMel_CAF1
Location 26,880,922 – 26,881,018
Length 96
Max. P 0.627982
window15985

overview

Window 5

Location 26,880,922 – 26,881,018
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 97.91
Mean single sequence MFE -14.03
Consensus MFE -13.60
Energy contribution -13.93
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.97
SVM decision value 0.19
SVM RNA-class probability 0.627982
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26880922 96 - 27905053
GCGGAGGAAAGUUACACAACGCUAGCUAAUAAACUAUAGCUAUAAUAUGAAAUUUGUUUAUAAGUAAUACCAAACCGUAAAAUAAAAAAGGAAAAU
((((.((...(((((.......((((((........))))))...((((((.....)))))).))))).))...)))).................. ( -14.70)
>DroSec_CAF1 89325 94 - 1
GCGGAGGAAAGCUACACAACGCUAGCUAAUAAACUAUAGCUAUAAUAUGAAAUUUGUUUAUAAGUAAUACCAAACCGUAAAAUAA--AAGGAAAAU
((((.((..(((........))).(((.((((((.....(........)......)))))).)))....))...)))).......--......... ( -12.70)
>DroSim_CAF1 92370 95 - 1
GCGGAGGAAAGUUACACAACGCUAGCUAAUAAACUAUAGCUAUAAUAUGAAAUUUGUUUAUAAGUAAUACCAAACCGUAAAAUAAA-AAGGAAAAU
((((.((...(((((.......((((((........))))))...((((((.....)))))).))))).))...))))........-......... ( -14.70)
>consensus
GCGGAGGAAAGUUACACAACGCUAGCUAAUAAACUAUAGCUAUAAUAUGAAAUUUGUUUAUAAGUAAUACCAAACCGUAAAAUAAA_AAGGAAAAU
((((.((...(((((.......((((((........))))))...((((((.....)))))).))))).))...)))).................. (-13.60 = -13.93 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:26 2006