Locus 10035

Sequence ID 3R_DroMel_CAF1
Location 26,876,042 – 26,876,142
Length 100
Max. P 0.500000
window15984

overview

Window 4

Location 26,876,042 – 26,876,142
Length 100
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 89.49
Mean single sequence MFE -21.32
Consensus MFE -14.34
Energy contribution -14.90
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -1.84
Structure conservation index 0.67
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26876042 100 - 27905053
UUAUGCGCUUUA-----------AUAUAUAUUAUUUUGCAUUGUUUAAUGUAAGCCGGAAUUUCUGAAUUCAAUUUUCUCAGCUGAUUUAUAUGCGCUUAUCAAUAUUUAC
....((((....-----------(((((.((((..(((((((....)))))))((.((((....((....))...))).).)))))).))))))))).............. ( -14.60)
>DroSec_CAF1 84403 111 - 1
UUAUGCGCUUUAAGCCCUGCUCGAUAUAUAUUAUUUUGCAUUGUUUAAUGUAAGCCAGAAUUUCUGAACUCGAUUUUCUCGGCUGAUUUAUAUGCGCUUAUCAUUAUUUAC
....((((.((((((..(((..((((.....))))..)))..))))))....((((((((..((.......))..)))).)))).........)))).............. ( -25.50)
>DroSim_CAF1 87473 111 - 1
UUAUGCGCUUUAAGCCCUGCUCGAUAUAUAUUAUUUUGCAUUGUUUAAUGUAAGCCAGAAUUUCUGAAUUCGAUUUUCUCGGCUGAUUUAUAUGCGCUUAUCAUUAUUUAC
....((((.((((((..(((..((((.....))))..)))..))))))....((((((((..((.......))..)))).)))).........)))).............. ( -25.50)
>DroYak_CAF1 98687 111 - 1
UUAUGCGCUUGAAACGCUGCUCGAUAUAUAUUACUUUGCAUUGUUUAAUGUAAGCCGGAAUUUCUGAAUUCCAUUUUCUCGGCUGAUUUAUGUGUACUUAUCAUUAUUUAC
...(((((.((((...(.((.(((..........((((((((....))))))))..((((((....))))))......))))).).)))).)))))............... ( -19.70)
>consensus
UUAUGCGCUUUAAGCCCUGCUCGAUAUAUAUUAUUUUGCAUUGUUUAAUGUAAGCCAGAAUUUCUGAAUUCGAUUUUCUCGGCUGAUUUAUAUGCGCUUAUCAUUAUUUAC
....((((............................((((((....))))))((((((((..((.......))..)))).)))).........)))).............. (-14.34 = -14.90 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:25 2006