Locus 10034

Sequence ID 3R_DroMel_CAF1
Location 26,872,152 – 26,872,247
Length 95
Max. P 0.639361
window15983

overview

Window 3

Location 26,872,152 – 26,872,247
Length 95
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 88.93
Mean single sequence MFE -24.04
Consensus MFE -18.60
Energy contribution -18.80
Covariance contribution 0.20
Combinations/Pair 1.10
Mean z-score -1.59
Structure conservation index 0.77
SVM decision value 0.22
SVM RNA-class probability 0.639361
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26872152 95 - 27905053
GAAU--GUGGCAACAGUUUGCGUUAAUUUAUGGCCACGUCUGACCUUACCCUAACGAGGUGUAAACUUAAAUGGGUAACAGAAGGUCGAAACGAAAA
..((--(((((...((((......))))....))))))).(((((((((((.....((((....))))....))))).....))))))......... ( -25.50)
>DroSec_CAF1 80537 96 - 1
AAAUG-GUGGCAACCAUUUGCGUUAAUUUAUGGCCGCGUCUGACCUUACCCUAACAAGGUGUAAACUUAAAUGGGUAACAGAAGGUCGAAACGAAAA
(((((-((....))))))).((((......(((((...((((...((((((.....((((....))))....)))))))))).))))).)))).... ( -26.40)
>DroSim_CAF1 83146 96 - 1
GAAUG-GUGGCAACAGUUUGCGUUAAUUUAUGGCCACGUCUGACCUUACCCUAACAAGGUGUAAACUUAAAUGGGUAACAGAAGGUCGAAACGAAAA
.....-(((((...((((......))))....)))))...(((((((((((.....((((....))))....))))).....))))))......... ( -23.40)
>DroEre_CAF1 89040 95 - 1
-GAAGUUUGGCAACAGCUUACGCUAUUUUAUUUCCACGUCUGACCUUACCCUAACGAGGUGUAAACUUAAAGGGG-AACAGCAGGUCGUAACGAAAA
-.(((((.(....))))))...........((((.(((((((......((((....((((....))))..)))).-.....)))).)))...)))). ( -20.30)
>DroYak_CAF1 94957 97 - 1
AAAUAUUUGGCAACAGCGUGCGUUAAUUUAUUGCCAAGUCUGACCUUACCCUAACGAGGUGUAAACUUAAAGGGGUAACAGAAGGUCGAAACGAAAA
....(((((((((.(((....)))......))))))))).((((((((((((....((((....))))...)))))).....))))))......... ( -24.60)
>consensus
AAAUG_GUGGCAACAGUUUGCGUUAAUUUAUGGCCACGUCUGACCUUACCCUAACGAGGUGUAAACUUAAAUGGGUAACAGAAGGUCGAAACGAAAA
......(((((.....................)))))...(((((((((((.....((((....))))....))))).....))))))......... (-18.60 = -18.80 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:24 2006