Locus 10033

Sequence ID 3R_DroMel_CAF1
Location 26,862,626 – 26,862,720
Length 94
Max. P 0.640438
window15982

overview

Window 2

Location 26,862,626 – 26,862,720
Length 94
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 74.53
Mean single sequence MFE -22.93
Consensus MFE -11.31
Energy contribution -11.70
Covariance contribution 0.39
Combinations/Pair 1.23
Mean z-score -1.76
Structure conservation index 0.49
SVM decision value 0.22
SVM RNA-class probability 0.640438
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26862626 94 + 27905053
-----GAAAAGAGCUUUUCGUCGGGGUUUCUGAAUCUGCUGAGCUUUCCACACGGACAUUCGCCCCAAUUUAUUUGCUUUGAAAUCAAUGCAAAUAAUU
-----(((((....)))))...(((((...((..((....))....(((....)))))...)))))...((((((((.(((....))).)))))))).. ( -23.00)
>DroSec_CAF1 70738 99 + 1
GAAAAGAAAAGAGCUUUUCGUCGGGGUUUCUGAAUCUGCUGAGCUUUCCUCACGGACAUUUGCCCCAAUUUAUUUGCUUGGAAAUCAAUGCAAAUAAUU
((((((.......))))))...(((((...((..((((.((((.....))))))))))...)))))...(((((((((((.....))).)))))))).. ( -28.60)
>DroSim_CAF1 72014 99 + 1
AAAACGAAAAGAGCUUUUCGUCGGGGUUUCUGAAUCUGCUGAGCUUUCCUCACGGACAUUUGCCCCAAUUUAUUUGCUUUGAAAUCAAUGCAAAUAAUU
...(((((((....))))))).(((((...((..((((.((((.....))))))))))...)))))...((((((((.(((....))).)))))))).. ( -31.00)
>DroEre_CAF1 78921 90 + 1
--------AAGAGCUUUUCGUUGGGGUUUCUGAAUCUGCUGAGCUUUCUUCAUGUACAUUUGUUGC-CUUUAUUUGCUUUGAAAUCAAUGCUAAUAAUU
--------...............((((..(.((((.(((((((.....)))).))).)))))..))-))(((((.((.(((....))).)).))))).. ( -13.50)
>DroYak_CAF1 84230 90 + 1
--------AAGAGCUUUUCGCUGGGGUUUCUGAAUCUGCUGAGCUUUCUUCAUGGGCAUUUGUUGC-CUUUAUUUGCUUGGAAAUCAAUGCAAAUAAUU
--------.(((((((...((..(((((....))))))).)))))))......(((((.....)))-))(((((((((((.....))).)))))))).. ( -22.90)
>DroPer_CAF1 115703 78 + 1
--------CAAAGCUGUUUA--GCGGUGGCUGUACCUGCUGAGCUUUUCGAGCCUAAGCUUUC---ACUAUAUCUGGUGGAUA--------AGAUAAUG
--------.((((((..(((--((((.(......))))))))((((...))))...))))))(---((((....)))))....--------........ ( -18.60)
>consensus
________AAGAGCUUUUCGUCGGGGUUUCUGAAUCUGCUGAGCUUUCCUCACGGACAUUUGCCCCAAUUUAUUUGCUUGGAAAUCAAUGCAAAUAAUU
.........(((((((...((..(((((....))))))).)))))))......................((((((((............)))))))).. (-11.31 = -11.70 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:23 2006