Locus 10032

Sequence ID 3R_DroMel_CAF1
Location 26,859,587 – 26,859,679
Length 92
Max. P 0.529007
window15981

overview

Window 1

Location 26,859,587 – 26,859,679
Length 92
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 77.22
Mean single sequence MFE -18.64
Consensus MFE -10.32
Energy contribution -10.30
Covariance contribution -0.02
Combinations/Pair 1.31
Mean z-score -1.59
Structure conservation index 0.55
SVM decision value -0.01
SVM RNA-class probability 0.529007
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26859587 92 + 27905053
CAGGUAGGCACAUC-CGC-ACUCC-C------CACUUCC---AAUGCCA---CCCACCUGGACGUGCUCGUAUUUGAGAUGAAACUUAUAU-ACAACGUGCUACACAU
...((((.(((...-.((-(((((-.------.......---.......---.......))).))))..((((.((((......)))).))-))...))))))).... ( -20.45)
>DroSec_CAF1 67740 92 + 1
CAGGUAGGCACAAC-CCC-ACUCA-C------CACUUCC---AAUGCCA---CCCACCUGGACAUGCUCGUAUUUGAGAUGGAACUUAUGU-ACAACGUGCUACACAU
...((((.(((...-.((-(((((-.------.......---.((((((---......))).))).........)))).))).((....))-.....))))))).... ( -19.07)
>DroSim_CAF1 68983 93 + 1
CAGGUAGGCACAAC-CCC-ACUCA-C------CACUUCC---AAUGCCA---CCCACCUGGACGUGCUCAUAUUUGAGAUGGAACUUAUAUAACAACGUGCUACACAU
...((((.(((...-...-.....-.------(((.(((---(.((...---..))..)))).)))((((....))))...................))))))).... ( -17.70)
>DroEre_CAF1 73498 100 + 1
CAGGUAGGCACAAC-CCCCACUCCUCAACUCCCAAUCCC---AAUCCCA---CCCACCUGGACGUGCUCGUAUUUGAGAUGGAACUUAUAU-ACAACGUGCUACACAU
...((((.(((...-...((((((...............---.......---.......))).)))...((((.((((......)))).))-))...))))))).... ( -17.15)
>DroYak_CAF1 80187 101 + 1
CAGGUAGGCACAAC-CCCCA-----CAACCCCCAAUCCCCCCACACCCAACUUCCACCUGGACGUGCUCGUAUUUGAGAUGGAACUUAUAU-ACAACGUGCUACACAU
...((((.(((...-.....-----........................((.(((....))).))....((((.((((......)))).))-))...))))))).... ( -17.30)
>DroAna_CAF1 75841 81 + 1
AAGGUG--UACCACACCC-ACUCA-U------CGC-------------C---CCAACUCAGACGUGCUUGUAUUUGAGCUGAGGCUUAUAU-ACGACAUGCUACACAU
..((((--.....)))).-.....-.------...-------------.---.......((.((((.((((((.(((((....))))).))-))))))))))...... ( -20.20)
>consensus
CAGGUAGGCACAAC_CCC_ACUCA_C______CACUUCC___AAUGCCA___CCCACCUGGACGUGCUCGUAUUUGAGAUGGAACUUAUAU_ACAACGUGCUACACAU
...((((.(((..........................................((....)).(((.((((....)))))))................))))))).... (-10.32 = -10.30 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:47:22 2006